Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01139 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCCAACATCTCAAAGCCGCTGCTATAGTTGGTAACGACGGTTCTGTTTGGGCTAAGAGCTCCGAATTCCCCCAGTACAAGCCAGAAGAGATTTCTGCCATTATGAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGGTTGCACCTTGCTGGATCGAAGTACATGGTTATCCAGGGGGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGCACTTCTGGAATCACCGTAAAGAAAACAAACCAAGCACTGATATTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAGAAGTTGGGAGATTACCTGATTGATCAAGGCATGTAA 396 45.71 MSWQSYIDDQLMYEVDGQHLKAAAIVGNDGSVWAKSSEFPQYKPEEISAIMKDFDEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKGTSGITVKKTNQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGM 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10038186 10039873 + Carg06460-RA Car14g01139 161041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01139 131 CDD PROF 2 131 IPR005455 GO:0003779
Car14g01139 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779
Car14g01139 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Car14g01139 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779
Car14g01139 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779
Car14g01139 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779
Car14g01139 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779
Car14g01139 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779
Car14g01139 131 SMART prof_2 1 131 IPR005455 GO:0003779
Car14g01139 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Car14g01139 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779
Car14g01139 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779
Car14g01139 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779
Car14g01139 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779
Car14g01139 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779
Car14g01139 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779
Car14g01139 131 PANTHER PROFILIN 1 131 - -
Car14g01139 131 Pfam Profilin 1 131 IPR005455 GO:0003779
Car14g01139 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Car14g01139 131 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
Car14g01139 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g00630 Car14g01139 CCT
Car14g01139 Car17g00703 CCT
Car08g00630 Car14g01139 ECH
Car14g01139 Car17g00703 ECH
Car01g00075 Car14g01139 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00075 Car-Chr1:421448 Car14g01139 Car-Chr14:10038186 1.21E-88 wgd
Car12g01245 Car-Chr12:11761833 Car14g01139 Car-Chr14:10038186 2.65E-65 wgd
Car14g01139 Car-Chr14:10038186 Car17g00703 Car-Chr17:6453074 1.38E-77 wgd
Car14g01139 Car-Chr14:10038186 Car05g01288 Car-Chr5:11896092 7.19E-73 wgd
Car14g01139 Car-Chr14:10038186 Car08g00630 Car-Chr8:4036191 1.35E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01139 K05759 - csv:101218089 258.07