Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g01140 | ATGGGGAAGGCAACGAGATGGTTGAGGACGTTATTGGGGATCAAGAGAGAAAAGAACGCCGATCAGAATTCATGTGATAAAAGAGAGAAGAATCGCTGGAGTTTCTCTAAATCTGGGAAGGAATTCACTGGAAAAGTTCAGAATCTGCCACCGCCGCCGCCGAGAAAAGCGGTGGCGGACGCCGATTGGCAGAGATCCTATAATACAGAAACAGAGGAAGAGCGGAATGAGCATGCGATTGCCGTCGCCGCCGCGTCGGCTGCTGCTGCTGATGCCGCTATGGCGGCTGCTCAGGCGGCTGTGGCGGTTGTTAGGCTGACGAATCAAACCAGAGGAGGTGCTCTGTTCTATGGAGGGAATGAGATTATGGCGGCTCTTAAAATTCAAAACGTTTTCAGGGGATTTTTGGCAAGAAAGGCGCTACGAGCGTTAAGAGGATTGGTGAAATTACAAGCTTTAGTTAGAGGATTTCTCGTTCGAAAACGAGCTGCTGCAACTTTACAGAGCATGGAAGCTCTGTTCCGAGCACAAACCACCGTCCGATCACAGCGTGCTCGTAGTCGTTCCAATAACGAAGAGAACAAATCCCAACCGGAGAAGTCGGCGGACATCGACGTCAGATCCCTTTACTCCAACGAAATTGAAGACCCAAAAATCGTGGAAATCGACACACTCTTCAGAAGACCCAAATCAAGATCCCGTCGATTCAACAGCCTTCTCCCGGAGCTGGCGGACGAACGGGCATCGCCATATCTCTGGACAATGGCGTCGCCGGCGAGATTCTCGGGAGGGGAGTGGTTTTTTGCGGGTGGAGAGGAATGTGGGCGGATGTCGACGCCGACGGCACACAGCACGCCACGAGTGGGGAACAGCGGGTGGGGGGTGGCGGCGGGGGTAGCGACGCCGACGAGGAGCGTGTATGGGGAGGGGTATTTTCGTGGATATTCGAATTATCCGAATTACATGGCGAGTACGCAGTCGTTTAAGGCGAAATTGAGGTCGCGAAGTGCGCCGAAACAGAGGCCGGAGGTGTGGACGAAGAAAAGGGCGGCGTGGAATGAGGTGATAGGGCCGAGAAACAGCATTAGCAGCGTTAGGATGCAGAAAAGTAGCCGCGGAGAAGAAGAAGGATTTTATCAACTGTGA | 1146 | 53.05 | MGKATRWLRTLLGIKREKNADQNSCDKREKNRWSFSKSGKEFTGKVQNLPPPPPRKAVADADWQRSYNTETEEERNEHAIAVAAASAAAADAAMAAAQAAVAVVRLTNQTRGGALFYGGNEIMAALKIQNVFRGFLARKALRALRGLVKLQALVRGFLVRKRAAATLQSMEALFRAQTTVRSQRARSRSNNEENKSQPEKSADIDVRSLYSNEIEDPKIVEIDTLFRRPKSRSRRFNSLLPELADERASPYLWTMASPARFSGGEWFFAGGEECGRMSTPTAHSTPRVGNSGWGVAAGVATPTRSVYGEGYFRGYSNYPNYMASTQSFKAKLRSRSAPKQRPEVWTKKRAAWNEVIGPRNSISSVRMQKSSRGEEEGFYQL | 381 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 10044241 | 10046135 | - | Carg06461-RA | Car14g01140 | 161042 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g01140 | 381 | MobiDBLite | consensus disorder prediction | 181 | 202 | - | - | |
| Car14g01140 | 381 | ProSiteProfiles | IQ motif profile. | 145 | 172 | IPR000048 | GO:0005515 | |
| Car14g01140 | 381 | Pfam | IQ calmodulin-binding motif | 148 | 162 | IPR000048 | GO:0005515 | |
| Car14g01140 | 381 | Pfam | IQ calmodulin-binding motif | 123 | 142 | IPR000048 | GO:0005515 | |
| Car14g01140 | 381 | MobiDBLite | consensus disorder prediction | 18 | 36 | - | - | |
| Car14g01140 | 381 | MobiDBLite | consensus disorder prediction | 186 | 202 | - | - | |
| Car14g01140 | 381 | MobiDBLite | consensus disorder prediction | 18 | 58 | - | - | |
| Car14g01140 | 381 | ProSiteProfiles | IQ motif profile. | 121 | 149 | IPR000048 | GO:0005515 | |
| Car14g01140 | 381 | Pfam | Protein of unknown function (DUF4005) | 286 | 364 | IPR025064 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car14g01140 | Car17g00704 | CCT | |
| Car08g00629 | Car14g01140 | CCT | |
| Car14g01140 | Car17g00704 | ECH | |
| Car08g00629 | Car14g01140 | ECH | |
| Car01g00077 | Car14g01140 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car14g01140 | Car-Chr14:10044241 | Car14g01570 | Car-Chr14:12821341 | 7.27E-35 | dispersed | |
| Car15g01088 | Car-Chr15:8543442 | Car14g01140 | Car-Chr14:10044241 | 9.50E-19 | dispersed | |
| Car01g00077 | Car-Chr1:426983 | Car14g01140 | Car-Chr14:10044241 | 4.66E-168 | wgd | |
| Car10g00607 | Car-Chr10:3093336 | Car14g01140 | Car-Chr14:10044241 | 6.53E-82 | wgd | |
| Car11g00535 | Car-Chr11:2896851 | Car14g01140 | Car-Chr14:10044241 | 3.82E-82 | wgd | |
| Car14g01140 | Car-Chr14:10044241 | Car17g00704 | Car-Chr17:6456875 | 1.27E-92 | wgd | |
| Car14g01140 | Car-Chr14:10044241 | Car08g00629 | Car-Chr8:4031350 | 9.07E-103 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g01140 | - | - | cmos:111457981 | 706.057 |