Cucurbitales platform

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car14g01142	ATGTTTTCGTCGATGAATCCTGTACGATTTTCCAGTTTGGTCTTCCTTCTATACTTTGCCCTTCTTCTTCAACATCATTCCCTCTGTTCCTCTTATCCCATGCCCTTAAATTGTACGGACACGACCCGTTTATGCACCTCGTTTCTGGCCTTTGAGCCTCGCCCAAATCAGACCCTTTCTGTGATCCAGAGTATGTTCGACGTATTGCCTGAAGATGTCACTGTCGAAGGAAATGGTCGGGATTACGTGTTTATTAGGAAGAACTGCTCCTGTGCTTCTGGGTTGAAGAAATATATAACCAACACAACTCTTACCATCAAATCCAATCGTGGGTATGTCTATGACATAGTCATGGAAGCGTATGATGGGCTTGCGTTGTTGCCCAATACAACCCGAATGGCGAGGAACGGTGCTGTTGTGTCTTTGAGGCTGTTTTGTGCCTGTTCAAGTGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGCGATACCATAGAGTCTTTGGCTAGCCGATTTGGGGTTAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCAGGCAATGTCACTGTGGGTGCTTTGTATTATATTCCCTTGAATTCGGTTCCTGGCGATCCTTATCCATTGGAGACAGACATTTCTGCTGCTCCTGCTCCAGCTCCTTCCTTTACTCTGAACAATTTCACTGATAATGCTGAAACCCCCAAACGTGATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTAGTTGGCATAGTAAGTTATGCTTGCTTCAGGTGGTTGAAATGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCGGTGGCAAGGTTCCCCACAAGTTCCATATTCTTGGCAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTACATTTGCTGCAGTTCTGCAGGTTGGAAGCAAGCCAGCGGGGAGTCTAGTGACAACCAGAGTGCATTTCCGAAAGTTATCGAGAGCAATGTATTTGACGTAGACAAACCTGTGGTTTTTTCATACGAAGAAATTTTTTCCTCAACCGATGGTTTCTCTGATTCGAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTATTATGGTATCCTGCGTGACCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTCATGGCAGAGATGAAAGTCCTGTGCAAGGTTCATCATGCAAACCTGGTTGAATTGATTGGTTATGCAGCCAGTGAGGAGGAGCTCTTCCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAGTCATTTACATGATCCTCTGAACAAGGGGCATACGCCACTATCTTGGATTATGAGACTCCAAATTACTTTAGATGCTGCTAGAGGTCTCGAATACATTCACGAGCATACTAAAACTCATTACGTCCACAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGAGCAAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACAAATGAGGGTGAAGCTACTGTAACGAAAGTTGTCGGTACATACGGTTACCTGGCTCCCGAATATTTGAGTAATGGGCTTGCGACAACGAAAAGTGATGTGTATGCTTTCGGTGTCGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCAATTATACGAACTGAGGGAACAACTATGAGAAATCCTGAAAGACGTTCGCTAGCATCAGTTATGTTAGCTGTTCTTCGGAACGCTCCTGATTCTATGAATATGGCAAGTTTGAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTCAAGGTGGCCATGTTGGCAAAGCAGTGTGTGGATGACGATCCCATCTTACGACCCGACATGAAGCAAGTCGTAATATCCTTGTCGCAGATCCTACTGTCTTCGGTCGAATGGGAAGCGACTCTAGCTGGTAACAGCCAAGTTATGGGTATTCGAGGTTTCTCGGACATACCGAAAAAGAGTGTATCGAAACATGGGTGTCGGGGATCTAGTCTTGGGGTGCTACCGGCGGCGATCAAGATGTCGGTGAGAAGGAAATCTGGGAGAAAACCACTGAGGGACATAGCGAACCACAATTACGGCCGAACTTCCTCCAAATCTGTCGCTACAGCCAAGAGAAAGGAAGATGATAATAGGTCTAAGGTTGAAGAGCAAGATGACGCTCTCGATCGTCTCCTTCTAGTTCAGTCTGATCTCTCGGCGCTCACTGACCAGTCTATCGTTGCATTAACTACCACCGAAGTAGAGTATATGACAGTCACTGAAGCTTTTAAAGAAGCTATTTGGATGCATGGTTCGCTTCACCTTACCGTAGTGAATTGGCAGATCGATGAACTCGTTGTCAAAGCATTTGAACTGAAGAAAATGGATGAACAAGGGAGAAAAGAGATCGAATCTTTCACTCATGTCTTATCTGATATGCTATCTTCTTTGAAGCCCTGGGTCCCCAGGTTCCAGATGGCGTTCTCTCGTCCATCAAAAGATTCTGATGATGGTATAGAACAACCATTGGCTAGTGAAGGCAATGCTTTGGTTAATGATACGGAAAGCAACGTTATTGATAGCCCAGACAATGCTGAAATTCAAGATCTGATCTCCCCTTCACCCCTCGTATCATGGCGTGCTGGATGCAATATCGAGAGGGGAAGACAATTGTTTTTACTCACTCCTCTTCCTATTTCTAAATCACTCTCATCTAAACATGCAGCATACTCTAAATCTGTACTTGGCGGAATTACTTCGGGTACACTTAAGGGTGCACAACCATGTTTTTTTGCATGTGGAGATTTAAACGAGAATCTACTTGAAGGTAATGGAGTTGAGCCTAGTGTTAGTAAACCATTTGGGTCCGATTTAACCAAACTGGGGGACAATTTGCTAGAGGATAATGGACCTCAGCCTAGTGGTGCTGAGCCGTCTGGGTCTGATTTAACACAAGTAGGGACAATTCATCAGAGAGGATTTGCTTCCCCACCATTATTATCAAAGAAGAATTGCTCTATGTTAGTTATGACACCATGCTTAAAAATGTCGCCACCAAAATCTTGTGTACTGCTGGAACCCATTTCAGAGTCGTCACAAAAAGACAAAAAAAGGATTTACAAGGCCACCCCTTTTCCAGTTGGAGTTCATGTTTCCTCTTCTGGCAGTGACACTTCTGATGGGTTGGCTTTGAAGTATCCAGAACTCCTAGGAATTCAACAGGCTCACAAATCAGGAATTAAAAAGAAGGTTGAAGCTTCTCCGGACTGGTTTATGTCACCCCCAAAAACATGTGTTTTACTGGAGCCGTCTGATTCTCATTCGGTGGAAAGTGCTAATTTTGATGGATGTTACTACGAAGCCAAGAAATCTTTCACCCACCAAGATCCAGTTGGAGTCAGCTTGCCGATCATAGATAACACTCCCATGTTGAAGGAATGTGAAAGTGTATTCCGGGTTGGCAAACGTGCTGGTGAGGAAACTCTTAAGAAAGAACTCTGGCTGAAATTTGAAGCAGCATCAGCCAATCCATTTCGTTGTGATCAATCTCTTCAAAAGACATCAAAGGGTTTCCTGGACTTGTTGGATGAGGTTTCATGTGATTAG	3651	43.49	MFSSMNPVRFSSLVFLLYFALLLQHHSLCSSYPMPLNCTDTTRLCTSFLAFEPRPNQTLSVIQSMFDVLPEDVTVEGNGRDYVFIRKNCSCASGLKKYITNTTLTIKSNRGYVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPGNVTVGALYYIPLNSVPGDPYPLETDISAAPAPAPSFTLNNFTDNAETPKRDPPYIWIVGSLGIILVLILVGIVSYACFRWLKCFSRSRSSHSKDPGGKVPHKFHILGKSSFCCASGRYICCSSAGWKQASGESSDNQSAFPKVIESNVFDVDKPVVFSYEEIFSSTDGFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEYAQKGPLKSHLHDPLNKGHTPLSWIMRLQITLDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAFGVVLFELISGKEAIIRTEGTTMRNPERRSLASVMLAVLRNAPDSMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDDDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVMGIRGFSDIPKKSVSKHGCRGSSLGVLPAAIKMSVRRKSGRKPLRDIANHNYGRTSSKSVATAKRKEDDNRSKVEEQDDALDRLLLVQSDLSALTDQSIVALTTTEVEYMTVTEAFKEAIWMHGSLHLTVVNWQIDELVVKAFELKKMDEQGRKEIESFTHVLSDMLSSLKPWVPRFQMAFSRPSKDSDDGIEQPLASEGNALVNDTESNVIDSPDNAEIQDLISPSPLVSWRAGCNIERGRQLFLLTPLPISKSLSSKHAAYSKSVLGGITSGTLKGAQPCFFACGDLNENLLEGNGVEPSVSKPFGSDLTKLGDNLLEDNGPQPSGAEPSGSDLTQVGTIHQRGFASPPLLSKKNCSMLVMTPCLKMSPPKSCVLLEPISESSQKDKKRIYKATPFPVGVHVSSSGSDTSDGLALKYPELLGIQQAHKSGIKKKVEASPDWFMSPPKTCVLLEPSDSHSVESANFDGCYYEAKKSFTHQDPVGVSLPIIDNTPMLKECESVFRVGKRAGEETLKKELWLKFEAASANPFRCDQSLQKTSKGFLDLLDEVSCD	1216

Gff information

Chromosome	Start	End	Strand	Old_gene	Gene	Num
14	10060333	10070692	+	Carg06463-RA	Car14g01142	161044

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car14g01142	1216	MobiDBLite	consensus disorder prediction	699	737	-	-
	Car14g01142	1216	MobiDBLite	consensus disorder prediction	722	737	-	-
	Car14g01142	1216	MobiDBLite	consensus disorder prediction	846	872	-	-
	Car14g01142	1216	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	479	491	IPR008271	GO:0004672\|GO:0006468
	Car14g01142	1216	ProSiteProfiles	LysM domain profile.	157	201	IPR018392	-
	Car14g01142	1216	Pfam	Protein tyrosine and serine/threonine kinase	365	640	IPR001245	GO:0004672\|GO:0006468
	Car14g01142	1216	MobiDBLite	consensus disorder prediction	976	999	-	-
	Car14g01142	1216	ProSitePatterns	Protein kinases ATP-binding region signature.	366	387	IPR017441	GO:0005524
	Car14g01142	1216	ProSiteProfiles	Protein kinase domain profile.	360	647	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car14g01142	1216	Pfam	LysM domain	159	196	IPR018392	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	Car01g00080	Car14g01142	CST

Duplication type information

Select	Gene1	Location1	Gene2	Location2	E-value	Duplicated-type
	Car04g01456	Car-Chr4:8452358	Car14g01142	Car-Chr14:10060333	4.10E-44	dispersed
	Car14g01142	Car-Chr14:10060333	Car14g01593	Car-Chr14:12919959	4.00E-61	dispersed
	Car01g00080	Car-Chr1:440943	Car14g01142	Car-Chr14:10060333	0	transposed
	Car04g01787	Car-Chr4:10210139	Car14g01142	Car-Chr14:10060333	8.58E-116	transposed
	Car11g01498	Car-Chr11:12075173	Car14g01142	Car-Chr14:10060333	2.54E-88	transposed
	Car01g00079	Car-Chr1:436340	Car14g01142	Car-Chr14:10060333	0	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	89339	PF07714	PK_Tyr_Ser-Thr	2.40E-48	CL0016	Car	PK

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car14g01142	-		-	csv:101213624	1207.59