Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01242 TCACATAATTACGACTCGAGTGCCAACTGCCCTCGCCCTGCCCCTCTCCACCGCTCTCTCTCTCTTCTCTCTCTCCTCTCTCTCCGATCTCGATCTTCTCTTCTGGTGGAGAAGAAGATGCAGATGATGGTCTCCAAGGCTTCCTCAGCCATGGCCTCCATGCCTTGCACTAGGTATGACGATGAATATCTAACGGATTCGATTTTGTTGCTCCTCTTGTTTGAAATTGGTACTGCTAATTTTGTTGCTAAGATCTGTAACATCATGATGTACGATCCTTCCTTCTCGTGTCTTGTTGGAAGCGTATGTGTCTGGCCGAGCATGAAACAGCTTTCTTTTAGAAAAGACCTTTTGTATGGGGTTATGAGACTCTTATCTATACCATTGAAAACATTGCGTGGAGCTAGTCGTTCACTTAAAGTTGCTCAGTTCTGCAGTGTCGTCAATATGTCTTCCACATTGCAAATTGAACTGGTACCTTGTCTTCGTGACAACTATGCATACCTCTTACATGATGTTGATACGGGCACAGTTGGGGTTGTTGATCCTTCTGAAGCTGTACCAGTTATAGATGCTTTAAGAAAGAAAAACAGAAATTTGACATATATACTTAATACACATCATCATCATGATCACACTGGTGGGAATGAAGAATTAAAAGCAAGGTACGGAGCAAAGGTGATTGGCTCTGGAATAGATAGCGACAGAATTCCTGGAATTGACATAGCTTTAAAGGATGGAGACAAGTGGATGTTTGCTGGGCATGAAGTGCAAGTAATGGAAACTCCTGGTCATACTCGAGGTCATATTAGCTTCTACTTTCCTGGATCCGCTGCAATATTTACTGGAGATACTTTATTCAGCTTATCTTGTGGCAAGCTTTTTGAAGGAACTCCTGAACAGATGCTATCTTCCCTTAAAAAGATCACTTCTTTGCCAGATGATACCAACATATTTTGCGGTCATGAATATACTCTGAGTAACTCTAAGTTCGCTATGTCCATTGAACCTAAGAACGAGGCTCTCAAATCTTATGCAACCCAGGTTGCCAATCTACGAAGCAAGGGCTTGCCAACGATTCCAGCAACATTAAAGATGGAGAAAATGTGCAATCCATTCCTCCGTACATCAAGTATCGAAATTCGGCAGTCGTTAAACGTTCAAAATACAGCGGATGATGCAGAGGTGTTGGGTATGATTCGCAGAGCCAAGGATAATTTTTAG 1224 42.48 SHNYDSSANCPRPAPLHRSLSLLSLLSLRSRSSLLVEKKMQMMVSKASSAMASMPCTRYDDEYLTDSILLLLLFEIGTANFVAKICNIMMYDPSFSCLVGSVCVWPSMKQLSFRKDLLYGVMRLLSIPLKTLRGASRSLKVAQFCSVVNMSSTLQIELVPCLRDNYAYLLHDVDTGTVGVVDPSEAVPVIDALRKKNRNLTYILNTHHHHDHTGGNEELKARYGAKVIGSGIDSDRIPGIDIALKDGDKWMFAGHEVQVMETPGHTRGHISFYFPGSAAIFTGDTLFSLSCGKLFEGTPEQMLSSLKKITSLPDDTNIFCGHEYTLSNSKFAMSIEPKNEALKSYATQVANLRSKGLPTIPATLKMEKMCNPFLRTSSIEIRQSLNVQNTADDAEVLGMIRRAKDNF 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10745212 10750468 + Carg06563-RA Car14g01242 161144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01242 407 Pfam Metallo-beta-lactamase superfamily 166 322 IPR001279 -
Car14g01242 407 Hamap Hydroxyacylglutathione hydrolase [gloB]. 154 407 IPR017782 GO:0004416|GO:0019243
Car14g01242 407 Pfam Hydroxyacylglutathione hydrolase C-terminus 323 407 IPR032282 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01242 K01069 gloB, gloC, HAGH; hydroxyacylglutathione hydrolase [EC:3.1.2.6] - csv:101223148 573.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00608 Car-Chr9:3474455 Car14g01242 Car-Chr14:10745212 1.31E-09 dispersed
Car04g00980 Car-Chr4:5659611 Car14g01242 Car-Chr14:10745212 1.84E-48 transposed
Car14g01242 Car-Chr14:10745212 Car06g01447 Car-Chr6:10303083 4.00E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1275 . . . . . Bpe14g01061 . . . . Cma06g01708 Cma14g01412 . Car14g01242 Sed02g0960 . . Bhi01g03727 Tan10g1384 Cmetu07g1769 . . . Lcy11g1001 . . . . . . . . . . . . . . Cme07g01973 Blo02g00447 Blo07g00115 Bda11g00477 Bda13g00253 . . Bma02g00969 Bma06g01440 . . Cmo14g01447 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006291 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01242 Car_Chr14 FPKM 41.393616 37.994362 46.775314 42.76757 25.247749 21.877165 29.517691 55.808651 48.598827 60.044151