Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01252 ATGGAAAACCCCTTTCCATCCAAGGAGGAAGGGATGGGGTATTGGGGGCCTTCCAGAACTCAGGCCGATGCTCTGACTTTTACTGACGCTGGAATGAGGATTCCTAGTCCTGAAGATGTGCTCCACAGCATCTCAGAGCTGATGAGTTTTGATACTTATGCAGGATGGGGCAACAACTGTGCAGTAATGGATCCGGTTTTCACCTCTTGTGGAATTTCGTCGATTCCGCCAACGAGTACTTGCCCTTCTATGGAGGGCTCAACTTTCCCAGAAGGGGGGAGCCATGAAATACTTCCTCTGAATGAACTTGGTGGAGCTTCCATTTCCATGGCGAATTCTTTTACCTGTGGAGACGAGGTTACGTTTCAGCAGCCAGATACTGAATTTGGGGTATCTGATGTTTCGGACAACACAAATGAATCAGGTTCGAATTCAAATAACGTCCAAGACATGGATAGTTGTTTGATTTCTAGGCCGCTTGGTTGGTCCCTTGATGAGAGAATGCTGAGGGCATTGTCCTTGTTTAAAGAGTCTTCACCTGGAGGTATTTTGGCTCAAGTCTGGGTGCCTATGAAGCATGGAAACCAATTCTACCTGAGCACCACCGATCAGCCGTATTTGCTCGATCAAATGCTCACTGGGTACCGTGAAGTATCGAGGTGGTATACATTCTCTGCAGAAGGGAAACTGGGTTCTCTCCTTGGACTTCCTGGTCGTGTTTTCAATTCCAAAATTCCAGAATGGACATCAAATGTTAGATATTACAGTGACGCTGAGTATCTGAGAATGGAACACGCAATCGGTCATGAGGTTTATGGATCAATTGCCTTACCAATATTCAGTAATGAACTTGAAAGGTCATGCTGTGCCGTACTTGAAGTTGTTACTACAAAGGAGAAGCCCAATTTTGATGCAGAGATTGACATTGTTTCCCGAGCGCTGGAGATTGTTAGCTTGAGAACTATTGCACCGCCTCGACTATATCCTCAGTGTTTGAAGCAGAACCAGAGATCTGTATTAGCAGAGATAACAGATGTGCTACGCGCTGTATGTCATGCACATAGGCTACCTCTGGCACTCACCTGGATTCCTTGCTGTTATACCTTGCAAGCTGTTGATGAGGCTGCTAGAGTTCGTGTGAAGGAGAACGACGTCAGCCCAAAGGGGAAATCTGTATTATGCATTGAGGAAACAGCGTGTTATGTGAATGACAAAGAAACTCAAGGATTTGTGCATGCGTGTATGGAACATCATCTTGAAGAAGGACAAGGGATAGTTGGGAAGGCTCTTCAATCTAATCATCCCTTCTTTTATCCTGACGTGAAGGCATATAATATTAATGAGTATCCGCTGGTCCATCATGCACGCAAGTTTGGTTTGAATGCTGCCGTTGCAATCAGGCTGAGAAGCACATACACTGGTGCTGATGATTATATACTCGAATTCTTTCTACCTGTCAATATGAAAGGAAGCTCAGAACAGCAACTTTTATTGAACAATCTCTCTGGTACCATGCAAAGAATGTGCCGGAGCTTGAGAACAGTTTCAAAGGACGAATTATTGGGGGCCAAGGATCCTGATGCTGGATTCCAGAGTGGAATGGTTGGTAAGCCTGCAACTACGTCCAGGAGAAACTCACAGTCTACGGTTACAGACAGTGAAACAAGGGTATCTAACTCGATAAATGATGGAACTAAAGCGGAATGCCCTAAGAAGCAGCAGACGACTAATGGTACACGGAAGCAGGCGGACAAAAAACGTAGCACAGCTGAAAAAAACGTGAGCTTTAGCGTTCTTCAGCAATATTTTTCTGGGAGTCTCAAGGATGCAGCGAAGAGCATTGGTGTTTGCCCAACAACCCTGAAAAGAATATGCAGACAACATGGGATTCTGAGGTGGCCGTCCCGTAAAATAAACAAGGTAAACCGTTCGTTGGGGAAAATACAGACGGTTCTCGATTCTGTGAAGGGGGTGGAGTGTAGACTGAAGTTCGATCCAACTACAGGGGGTCTTATGGCAGCCGGTTCTCTTATTCCAGAGCTTAATGGGCAGAACAGTCCTCTCTTCTCTGATAACAATCCATCTATAATAAACCTCGAGCCGTTACCTCGGGATGTAAATTCAGTTCCTCCTATCCCTTTCGATAGTCAGAACCCCCCCGTGAAGTTGGAAATGGACGACCAAAGAAACTCGTCGAGGAGTCTTCTTATTCCTGAGAAGGAACCCAGTGTTTGCCAGCTTGATTGTAGTGAAGGTTCAAAGTCCACTGGGTTAGATGCTGCATCATGCCAGCTTTCTGGCCTGGATGTGATGGATTGGGATGTCCCAGGGAATGCCGCAGGTTGTGTTACGGCTAGAAAAGGCAACGGATTGGATTTTGTTGAGAATAATTTGAGGTCATGCTCTTTTGGGGCTGCCAACGGGGTGGGAACCATGTGGGAAGGCAGCGATGGAATGAATGAACATTACCAGCCAACTACTTCAAGCATGACGGACTCATCGAATGGCTCTGGCTTATTGATCCACGGGAGTTCGTCCAGCGGTCAGAGCGTCGAGGAGAGGAAGCATTTGCAAGAAAAAACTAGCTGTGTTGACAGTGATTCAAAGATCGTTGTAAAAGCTTCATACAAAGAAGACACGGTTCGATTCAAGTTTGATCCGTCTTTAGGATATCTCCAGCTCTATGAAGAAGTTGGCAAGAGATTCAAATTAAACCAGGGGACATTCCAGCTCAAATACCTTGATGACGAAAAAGAATGGGTAATGCTAGTTAGCAATTCAGACATGCAGGAATGTCTTGAGGTGATGGACGAGATCGGCACCAGAAACGTGAAGTTTCTCTATTTCCATCAACAAGTTGCTGAGAAAGGAAGGTCAATCATGCCGCTGCACTCGAGACCATCACGGCCTCTCAAGGTTCTGAAAGTTGAAAGCACTCCAACGTTCGGGTCGAGTCAAGGTGAGCTCACGGACTCATACCGAATTAGAATCACGGTCGTTCACTCACCCCTTGAGAGAAGATCTCTCCCCGTTTCTGATGCAATTTCTCACCGATTTCTATGGATTCTAAGCCTCAGCCTGCAGTTAATTTTGTTTTATACCGTTCTTTTGATTATTGCAGCTTCTAATCCTCCCCCGAAACCCTGGGAACGAGTAGGGGGATCATCAGGTCCAGCACCTTTTAGACCCCCATCAGCTGGCAATACAAGCGACGTTGTAGAGGCTTCGGGGACTGCAAAACCTGGGGAAATTGTTTCTAGTTCTGATAGTACTGCTGCTATTAATAGGAACTCACTTGGCAGGCCTGTTCCAACAAGGCCTTGGGAGCAAAACTATGGGAATACCAGCTATGGAGGAGGAGGAGGTTATGATTTAAATTTTTTCGCCTCTTTGCTACTGATGTTTGCTTTCCCATGTGATATTCTTCCTCGGAAGCTGAGGTTATATCGTGTTTTTGTTAATGCAGCTTATGGTTCAACTATGAATAATTCTCTCTACGGTTCTGGAATGTATGGTTCGTCTTCTTATGGTGGAGGAATGTATGGTGGTGGAATGTATGGAAACAACAGCATGTATAGAGGAGGTTATGGTGGGCTTTATGGATCTTCTGGTATGTACGGAAGTGGCGGTATGTATGGAGGTGGAATGTATAACAGTGGCGGCCTTGGAGGTCCGATGGGTGGCTATGGAATGGGGATGGGTGGTCCTTATGGTGGTCAAGATCCAAATGACCCGTATGGTCCTCCCTCATCTCCTCCAGGATTTTGGATGTCATTTCTGCGCGTGATGCATGGTGTCGTGAACTTCTTTGGTCGAATATCTATTCTTATTGACCAGAACACGCAGGCATTCCATATGTTCATGACTGCACTACTTCAGCTTTTCGACCGCTCTGGTATGTTATATGGAGAGCTTGCTAGATTCGTCTTGAGACTGCTTGGGATTAAAACAAAACCTAGGAAGGTTCAAAATGTGGGTCCTGATGGGCTTCCTCTTCCTGGAGCCCCCCATCCTCATCAAGGCCAGAACTCGATCGAGGGACCGAAGGCCTCTCCTGATGTTCCGTGGGATAATGTTTGGGGGAATGGTTCCCAGTAA 4098 46.1 MENPFPSKEEGMGYWGPSRTQADALTFTDAGMRIPSPEDVLHSISELMSFDTYAGWGNNCAVMDPVFTSCGISSIPPTSTCPSMEGSTFPEGGSHEILPLNELGGASISMANSFTCGDEVTFQQPDTEFGVSDVSDNTNESGSNSNNVQDMDSCLISRPLGWSLDERMLRALSLFKESSPGGILAQVWVPMKHGNQFYLSTTDQPYLLDQMLTGYREVSRWYTFSAEGKLGSLLGLPGRVFNSKIPEWTSNVRYYSDAEYLRMEHAIGHEVYGSIALPIFSNELERSCCAVLEVVTTKEKPNFDAEIDIVSRALEIVSLRTIAPPRLYPQCLKQNQRSVLAEITDVLRAVCHAHRLPLALTWIPCCYTLQAVDEAARVRVKENDVSPKGKSVLCIEETACYVNDKETQGFVHACMEHHLEEGQGIVGKALQSNHPFFYPDVKAYNINEYPLVHHARKFGLNAAVAIRLRSTYTGADDYILEFFLPVNMKGSSEQQLLLNNLSGTMQRMCRSLRTVSKDELLGAKDPDAGFQSGMVGKPATTSRRNSQSTVTDSETRVSNSINDGTKAECPKKQQTTNGTRKQADKKRSTAEKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKVNRSLGKIQTVLDSVKGVECRLKFDPTTGGLMAAGSLIPELNGQNSPLFSDNNPSIINLEPLPRDVNSVPPIPFDSQNPPVKLEMDDQRNSSRSLLIPEKEPSVCQLDCSEGSKSTGLDAASCQLSGLDVMDWDVPGNAAGCVTARKGNGLDFVENNLRSCSFGAANGVGTMWEGSDGMNEHYQPTTSSMTDSSNGSGLLIHGSSSSGQSVEERKHLQEKTSCVDSDSKIVVKASYKEDTVRFKFDPSLGYLQLYEEVGKRFKLNQGTFQLKYLDDEKEWVMLVSNSDMQECLEVMDEIGTRNVKFLYFHQQVAEKGRSIMPLHSRPSRPLKVLKVESTPTFGSSQGELTDSYRIRITVVHSPLERRSLPVSDAISHRFLWILSLSLQLILFYTVLLIIAASNPPPKPWERVGGSSGPAPFRPPSAGNTSDVVEASGTAKPGEIVSSSDSTAAINRNSLGRPVPTRPWEQNYGNTSYGGGGGYDLNFFASLLLMFAFPCDILPRKLRLYRVFVNAAYGSTMNNSLYGSGMYGSSSYGGGMYGGGMYGNNSMYRGGYGGLYGSSGMYGSGGMYGGGMYNSGGLGGPMGGYGMGMGGPYGGQDPNDPYGPPSSPPGFWMSFLRVMHGVVNFFGRISILIDQNTQAFHMFMTALLQLFDRSGMLYGELARFVLRLLGIKTKPRKVQNVGPDGLPLPGAPHPHQGQNSIEGPKASPDVPWDNVWGNGSQ 1365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10795346 10805374 + Carg06573-RA Car14g01252 161154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01252 1365 MobiDBLite consensus disorder prediction 523 590 - -
Car14g01252 1365 Pfam RWP-RK domain 593 641 IPR003035 -
Car14g01252 1365 MobiDBLite consensus disorder prediction 1048 1088 - -
Car14g01252 1365 MobiDBLite consensus disorder prediction 1324 1365 - -
Car14g01252 1365 ProSiteProfiles PB1 domain profile. 869 952 IPR000270 GO:0005515
Car14g01252 1365 MobiDBLite consensus disorder prediction 1069 1088 - -
Car14g01252 1365 Pfam PB1 domain 871 945 IPR000270 GO:0005515
Car14g01252 1365 ProSiteProfiles RWP-RK domain profile. 575 661 IPR003035 -
Car14g01252 1365 MobiDBLite consensus disorder prediction 535 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01252 - - - csv:101222520 1580.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01252 Car-Chr14:10795346 Car16g00470 Car-Chr16:2984946 3.95E-18 dispersed
Car14g01252 Car-Chr14:10795346 Car06g01442 Car-Chr6:10250361 1.31E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1280 . . . . . Bpe14g01069 . . . . Cma06g01701 Cma14g01419 . Car14g01252 Sed02g0966 . Cpe03g01194 Bhi01g03703 Tan10g1398 Cmetu07g0313 . Hepe05g1115 . Lcy11g1016 . . . . . . . . . . Cone11ag0645 . . . Cme07g01966 Blo02g00452 Blo07g00121 Bda11g00482 Bda13g00247 . . Bma02g00962 Bma06g01446 . . Cmo14g01455 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006292 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4704 PF00564 PB1 2.80E-16 CL0072 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01252 Car_Chr14 FPKM 50.703274 52.268406 46.928265 46.538826 36.31628 38.00386 37.188175 45.595551 47.377918 49.748535