Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01253 ATGCTTCCACTGGATTTCATGTCATGGACTTCGATGATTGGAAATCTTTGTTTAAATGCAAAACACCTAGAAGTTTTGTCCCTTTTTGTCCATAAGTTCCAATGCTCATCAGGCTTTAAACCCGATAACCACATTTTCGCTGTTGTTTTCAAATCATGTGCTGCCCTTTTTGCCATCAACGTAGGAAAGGCACTTCAAGGTTATACAGTGAAACAGGGGGAATTAGCATGCCAGTCTGTGTATAAGGGATTGCTGAACTTGTATGCCAAATGTGGTGCTTTTGATGATTGTTGGAAATTATTTGAACAGTTGGAATACCGTGATGTTGTTACCTGGAACATAATCTTATCTGGGTATTGTCGGTCCCAAATACATGATACTAGGGCTATGAGATTATTTGTTAAGATGCATGCAGAGGGGGAAGTGAAGCTGAGCGCAATTACAATTGCTACCATTCTTCCAGTATGTTCCCGTGTAGGGCAAGGTGTTGTTGGGAGGAGCATACATTCTCATATCATGAAAACTGGATTGGAAAGGGATACTCTTGTTGGAAATGCTCTCATATCAATGTATGCAAAATCTGGGCACTCACAGAACGATGCATATGCTGCATTTAACAGCATTATTCACAAAGATGTTGTTTCATGGAATGCTATAATATCCGCTTTGGCAGAAAAGAATTTAATGTTTGATGCATTACACTTGTTCAATCTGATGCTGAAAGAACTCATAGAACCAAATTATGTAACAATTGCATGTATTTTACCTGTTTGTGCTTCCTTTGGTAAGCATGTTTCCTACAGGTTTGGAAAAGAGATCCATGGTTATGTGCAGCATAGGACTGAATTGATGGAAGATATTTTCGTCTGCAATGCATTGATGAACCTTTATTTGAGGGTTGGACAGATAGAAGAAGCAGAGATCTTGTTCTGGCACATGAAGCAGAGAGACTTAGTTTCATGGAATACTTTAATTTCTGGATATTCATTAAATGATAAGTGGTTGGAAGCTGTAGATCATTTCTGCAAGTTACTATGCTTAGGGGTTGAGTTTGATTCAGTAACTTTAATTAGTGTTTTACCTTCTTGTGCATACTCGCAAAACTTGGGAATGGGGAAAATGATCCATGGTTATATTATTCGTCATCCTATTTTGAGTGAAGATCTAACAGTTGGAAATGCTTTAATTAACTTCTATACAAAATGTTATGATATCAAATCAGCATTTCAGTCATTTTCCATGGTTTCTGGTAAAGATTTGATATCTTGGAATTCAATGCTTAACGCTTTTGCCGAGTTTGGGAACCATACTCAATTCCTGCATCTCCTTGGCTGGATGCTGCAGGAAGGATTCAAACCTGATCATTTTACTATCTTGAGTATAATCAGTTTTTGCGTTACAGTTTTAGGAGGAAGGATGGTTAAGGAGACTCATTGTTATTCAGTTAAAGCTTGTTTCCTTGAGGGTGATTCTGGTCCTACTATACTCAATGCTCTTCTTGATGCATATTCAAAATGTGGTAATATAGATTATGCATTAAAGATTTTTGCAGGCTCATCAGGAAAAAGAAACTTAGTGACATGCAATTCGATGATTTCTTGCTATGTTAATTGTAAGTCGCCCAGTGGTGCGCTTTCAGTATTTGCTGGGATGTCTGAGACTGATCTTACGACGTGGAATCTGATGATACGGGTTTATGTTGAGAATAATAGTCCTCGAGATGCTCTCGAACTTCTCCATAGGTTGCAAAATGAGGGTATGAAACCGGATGCAGTGACTATCATGAGCCTTCTACCCCTATGCAATGAAATGGCATCATTTCGCCAGTTGAAAGAATGTCATGGATATTCAGTTAGATCATGTTTTGAGGATGTATGCTTAGACGGAGCTTTACTTGACGCATATGCGAAATGTGGAGTTGTAGATTGCGCTCATAAGCTTTTCGAATCGAGCTCTCAGAAAGATTTAGTTATGTACACATCAATGATGAGTGGGTATGCAATGCATGGGAGGGGAGAGGAGGCACTCAAGGTTTTCAATAACATGCTAGAATCAGGGGTTAAGCCGGATGATGTGGTCATGACTTCCATTTTATCTGCATGTAGTCATACTGGTCTTGTAGATCAAGGTTTAGACATATTCCATTCAATGGAAGAGGTTCATCACATCAAACCAACCAAGGAACACTATGCTTGTGTGGTGGATCTCCTCTCACGAGGTGGCCGAATCAACGATGCATATTCTTTTGTGATTGGTATGCCTATCGAGCCTGATGCTAATATATGGGGGATACTTTTAGGTGCCTGCAAGACTCACCATGAAGTGGAGTTGGGCCTTGTTGCCGCAGAGCACCTTTTTGAAACTAAAACTGATGATATAGGAAATTATGTGGTTATGTCAAACCTTTACGCAGCAGATGCTAAATGGGATGGGGTCCTTGAGGTAAGAAGGCTGATGAAAGAGAGGGAATTAAAAAAGCCACCTGGTTGCAGTTGGATTGAAGTGGAAGGAGAGAAGAACATTTTTTTAGCTGAAGATTCCTTACATCCTCAAAGAAACATCATTTATAATCTCTTAAATACATTGCATCTGCAAATTAAAAGAACTGTGAACGTTGAAATTTTTGGCGACTACAATGTACGAAATTTGAGAATCCTGTGCTTGAAGGTGGCATTGGCATATTTAATATGCTATAGAGCATTTTCCACAAACTCAGAAGATTACGATCGGGGATTATTTTGCTTACGTCGATGCCCCCTGGAGGCTTATGGAATGATGGACTGCTTTCATACTGTAAGCTATAGCTATCTGAATGGTAACATGTGTCACAGATTACTATTGCTTGTCATCTGCATATCCAGTTTTCATGATGGAGTTGCCTTAGCAACGGTGGTTCAGCGTCGTCTAGTTTTGTCCATGAGAGAGCAGGCTCAGTCACCTAGTAGTGTGGTCTTCGATCCCATAGAGATATCACCTGCAGTTATCCCACAATACCCTTACCCAAATGAATCTCTACCTCCAATGTATCCAACTTTTCCTACCAGATACGAACCAGTTTTAACGGGGAGATGCCCTGTAAATTTTTCTGTTATATCAAATGTTATGGACAAAACAGCATCAGATTGTTCTCAGCCTATGGCAGCACTTGTAGGGAATGCTATTTGCTGTCCACAGCTAAGTAGCCTGCTCCATATCTTCCAGGGTTTCTACGGCTTAACGTCCGAACAGTTGGTTCTGCAAGAGGCAGTTGCTAATGATTGTTTTTCAGATATCATTAGTATCTTAGCCAGCAGAGGAGCTAATCAGACAATACCCTCTCTTTGCTCCGTCAAATCTTCAAATCTCACTGGCGGGTCATGTCCAGTGACAGACGTTGCGACGTTTGAAAAATTAGTTAACGTAAGCAAATTATTGGATGCGTGTGACACTGTTGATCCTCTCAAGGAGTGTTGTAGACCAATATGTCAGCCTGCTATCATGGAGGCTGCACTTCAGATATCTGGAGGGCAATTTTCTACTGATACAAGTAGTAATGTAGCAGCGCAGCCTAATCATATTGACTCGATAAATGATTGTAAAAGGGTTGTTTATTCATATATTTCCAGGAAACTCTCCTCAGATGCTGCCAACACTGCATTTCGAATATTATCTTCCTGCAAAGTTAACAAAGCTTGTCCTTTGGATTTTGAGCAGCCTTCAGAAGTAATTAAAGATTGCCGCAACGTTGCTGCTCCGAGTCCTGCGTGCTGCAAGTCATTGAATTCTTACATTGCGGGGATCCAAAAGCAGATGTTAATTACCAATAAACAAGCTATAATCTGTGCAACAATGTTCGGATCCATGTTGCGAAAAGGTGGGGTTATGACAAATGTTTATGAGCTGTGTGATGTCGACTTGAAAGATTTCAGCATTCAAGGATGTCTTCTTCGGAGCCTGCCTTCAGATCTGATATTTGACAAATCAACAGGCTTTAGTTTCACTTGTGATTTGACCGATAACATTGCAGCACCATGGCCTTCATCGTCCTCAATTTCGTCGTTGTCTCTTTGTGCCCCTGAGATGTCATTGCCTGCTCTACCAACATCTGAGACTAAGAGAAACAATGGTGGCCAGCGAGAGGAAGGATTGGATTTCCCAATGCCCATTTTTTTATTTTTTATTATGGTCACTGCATTTTTGTACTGA 4185 40.24 MLPLDFMSWTSMIGNLCLNAKHLEVLSLFVHKFQCSSGFKPDNHIFAVVFKSCAALFAINVGKALQGYTVKQGELACQSVYKGLLNLYAKCGAFDDCWKLFEQLEYRDVVTWNIILSGYCRSQIHDTRAMRLFVKMHAEGEVKLSAITIATILPVCSRVGQGVVGRSIHSHIMKTGLERDTLVGNALISMYAKSGHSQNDAYAAFNSIIHKDVVSWNAIISALAEKNLMFDALHLFNLMLKELIEPNYVTIACILPVCASFGKHVSYRFGKEIHGYVQHRTELMEDIFVCNALMNLYLRVGQIEEAEILFWHMKQRDLVSWNTLISGYSLNDKWLEAVDHFCKLLCLGVEFDSVTLISVLPSCAYSQNLGMGKMIHGYIIRHPILSEDLTVGNALINFYTKCYDIKSAFQSFSMVSGKDLISWNSMLNAFAEFGNHTQFLHLLGWMLQEGFKPDHFTILSIISFCVTVLGGRMVKETHCYSVKACFLEGDSGPTILNALLDAYSKCGNIDYALKIFAGSSGKRNLVTCNSMISCYVNCKSPSGALSVFAGMSETDLTTWNLMIRVYVENNSPRDALELLHRLQNEGMKPDAVTIMSLLPLCNEMASFRQLKECHGYSVRSCFEDVCLDGALLDAYAKCGVVDCAHKLFESSSQKDLVMYTSMMSGYAMHGRGEEALKVFNNMLESGVKPDDVVMTSILSACSHTGLVDQGLDIFHSMEEVHHIKPTKEHYACVVDLLSRGGRINDAYSFVIGMPIEPDANIWGILLGACKTHHEVELGLVAAEHLFETKTDDIGNYVVMSNLYAADAKWDGVLEVRRLMKERELKKPPGCSWIEVEGEKNIFLAEDSLHPQRNIIYNLLNTLHLQIKRTVNVEIFGDYNVRNLRILCLKVALAYLICYRAFSTNSEDYDRGLFCLRRCPLEAYGMMDCFHTVSYSYLNGNMCHRLLLLVICISSFHDGVALATVVQRRLVLSMREQAQSPSSVVFDPIEISPAVIPQYPYPNESLPPMYPTFPTRYEPVLTGRCPVNFSVISNVMDKTASDCSQPMAALVGNAICCPQLSSLLHIFQGFYGLTSEQLVLQEAVANDCFSDIISILASRGANQTIPSLCSVKSSNLTGGSCPVTDVATFEKLVNVSKLLDACDTVDPLKECCRPICQPAIMEAALQISGGQFSTDTSSNVAAQPNHIDSINDCKRVVYSYISRKLSSDAANTAFRILSSCKVNKACPLDFEQPSEVIKDCRNVAAPSPACCKSLNSYIAGIQKQMLITNKQAIICATMFGSMLRKGGVMTNVYELCDVDLKDFSIQGCLLRSLPSDLIFDKSTGFSFTCDLTDNIAAPWPSSSSISSLSLCAPEMSLPALPTSETKRNNGGQREEGLDFPMPIFLFFIMVTAFLY 1394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10806090 10814199 - Carg06574-RA Car14g01253 161155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01253 1394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 143 IPR002885 -
Car14g01253 1394 Pfam SPARK 1022 1172 IPR043891 -
Car14g01253 1394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Car14g01253 1394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 655 689 IPR002885 -
Car14g01253 1394 Pfam PPR repeat family 654 702 IPR002885 -
Car14g01253 1394 Pfam PPR repeat family 211 257 IPR002885 -
Car14g01253 1394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Car14g01253 1394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Car14g01253 1394 Pfam PPR repeat 526 552 IPR002885 -
Car14g01253 1394 Pfam PPR repeat 558 586 IPR002885 -
Car14g01253 1394 Pfam PPR repeat 319 349 IPR002885 -
Car14g01253 1394 Pfam PPR repeat 80 107 IPR002885 -
Car14g01253 1394 Pfam PPR repeat 289 317 IPR002885 -
Car14g01253 1394 Pfam PPR repeat 496 516 IPR002885 -
Car14g01253 1394 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Car14g01253 1394 Pfam E motif 772 834 IPR046848 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01253 - - - csv:101222281 1520.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00596 Car-Chr13:7733021 Car14g01253 Car-Chr14:10806090 7.37E-67 dispersed
Car14g01253 Car-Chr14:10806090 Car13g00474 Car-Chr13:7019807 1.12E-54 dispersed
Car14g01253 Car-Chr14:10806090 Car06g01441 Car-Chr6:10245812 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1282 . . . . . Bpe14g01071 . . . . Cma06g01699 Cma14g01422 . Car14g01253 Sed02g0971 . . Bhi01g03700 Tan10g1402 Cmetu07g1098 . . . . . . . . . . . . . . . . . . Cme07g01963 Blo02g00454 . . Bda13g00245 . . Bma02g00960 . . . Cmo14g01457 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007543 2 3 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 0 0 0 1 1 0 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01253 Car_Chr14 FPKM 8.180099 8.511521 7.287881 6.716377 11.659723 10.001184 11.448612 19.387129 18.272573 18.854494