Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01258 ATGGCTGTCCAAACCCACGTTTTTACCGGATTAGCTTTGGCTTCAACTCCTTCTTCTTCGTTTCAACCCTCTTCTTCCAAGCCCGCTACCCTCTGTGTCGCCACAAAGCTCTTAAGAACGTCCTTCCTTAATGGCGGAGGTGTAACCCACTTTTGTGATCCAAAGAGTGCATACGCTTCAAAGAACTCGTTGCTGGACATAGTTGATCAGAGGTGTGCTCCGTCGATTTGTGTTAAGCCAGAACAGACTGCAATAGCCGTTGACACTTTAACTACAATTTGTGGAGTTGGGAACATTTTACAAATTACAGAGATGAAATCTTTGCATCTTGATCGATCTCATGGTTGTAGACGTGGAGGGGCTCTTGGTGCCCGCATGAACCTGTTTGACCGTTTTGCAAGGGTCGTAAAGTCATATGCAAATGCACTTGTAAGTTCCTTTGAGGATCCTGAGAAAATCCTGGAGCAGACAGTGCTTGAAATGAATGATGATTTGACAAAGATGCGTCAAGCCACAGCACAGGTACTAGCTTCTCAGAAGCGTTTGGAAAACAAGTACAAATCTGCACAGCAAGCTGCTGATGATTGGTATCGAAAGGCACAATTTGCTCTCCAAAAGGGAGATGATGATCTTGCTCGGGAAGCTTTAAAGAGGCGCAAATCATTTGCTGATAATGCAAATTCTTTGAAAGCTCAACTTGATCAGCAGAAGAATGTTGTGGAAAATCTTGTTTCTAATACACGGCTATTAGAGAGCAAGATACAAGAGGCGAGATCAAAGAAAGACACACTGAAAGCACGTGCGCAGTCTGCAAAGACTGCAACCAAAGTGAGTGAAATGTTGGGGAATGTTAACACAAGCAGTGCTCTTTCTGCTTTCGAGAAGATGGAAGAGAAAGTTATGGCAATGGAGTCTCAAGCAGAAGCTCTTGGACAGTTAACTGCTGACGATCTTGAAGGAAAGTTTGCTCTGTTGGAGGGCTCATCAGTCGATGATGAGCTAGCGAACTTGAAGAAAGAGTTATCTGGAAGCTCAAAGAAAGGAGAACTTCCACCAGGAAGAACTGTTTCTGGCAGCGCGTTTCCGGTTCGTGATGCCGAGATCGAGTCGGAACTGAATGAACTGAGGCAAAAAGCAAGAGAATTGTAG 1149 44.56 MAVQTHVFTGLALASTPSSSFQPSSSKPATLCVATKLLRTSFLNGGGVTHFCDPKSAYASKNSLLDIVDQRCAPSICVKPEQTAIAVDTLTTICGVGNILQITEMKSLHLDRSHGCRRGGALGARMNLFDRFARVVKSYANALVSSFEDPEKILEQTVLEMNDDLTKMRQATAQVLASQKRLENKYKSAQQAADDWYRKAQFALQKGDDDLAREALKRRKSFADNANSLKAQLDQQKNVVENLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVMAMESQAEALGQLTADDLEGKFALLEGSSVDDELANLKKELSGSSKKGELPPGRTVSGSAFPVRDAEIESELNELRQKAREL 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10832663 10840923 + Carg06579-RA Car14g01258 161160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01258 382 MobiDBLite consensus disorder prediction 341 366 - -
Car14g01258 382 Pfam PspA/IM30 family 127 340 IPR007157 -
Car14g01258 382 Coils Coil 179 199 - -
Car14g01258 382 Coils Coil 293 313 - -
Car14g01258 382 Coils Coil 226 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01258 K03969 pspA; phage shock protein A - csv:101219852 566.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01258 Car-Chr14:10832663 Car06g01437 Car-Chr6:10230879 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1293 . . . . . . . . . . Cma06g01697 Cma14g01428 . Car14g01258 . . Cpe03g01200 . . . . . . . . . . . . . . . . . Cone11ag0666 . . . Cme07g01951 . . . . . . . . . . Cmo14g01464 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004034 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01258 Car_Chr14 FPKM 4.720906 5.574713 4.037618 3.631441 5.513507 2.989856 3.91587 9.114368 11.397658 9.664324