Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01275 ATGGAGAAAACCCCGCACCCAGAAAAGGTTTCTAGTTTATCAACAAATTTCAATAGGAAGTTTGCCAGTTTGGGCTCACCTGGCCGCACTCCCGATGCCGCCGATGATGCTAAATCGGATTCTGAAAAGCATCCAAATGATGATGATGCCTCCTCCATTGATCATTACCACCACCTTCTTTCCCAATCTGAAATTGCCTCGCTCTTCCAAGAGGTTGATCGATTCCTCCACAGTTTGTCCACTGCTGCTGACAATGCATTCAATCCCATCCCTGACATTCCCTCCTCCGTTCATTCCTTGTCCAATCTGGTGGACTCCATGACCTCCAGGTACAATTCTACCAAGAACCCTGCCAAGCTCGGCAGAGATCCCGACCGGGATTCTTCCTTTTTCGAAGCTCTGGATCGCATTTCCAAGATTGCCATTAAATTGGGCGAATTCAATCTCTGCACTGCCACCATTCCTTCGCTCAATCGGACCACCGCTGCTCTACAGCGAGCCATGACGTTGTTGGATGAAGAATTCAACAACCTTCTGAAAGAATGCAAGCATCTCGAGCTCGAATCGAAACCTGAATCGAAATCTGACACCAAATCGTCAAAGCAATCGTCCTTCAAAACAAACCACGAATTACCAGATCAACATCACAGAACCGTTCCTGAGTGTTCCGAGTCCGATAAGGAAGACGTATACCCTTCTTTCTCGCAGGAAACTGTGTCAAACATGAAGAGAATTGCCGGAACAATGATCTACGCCGGCTACGAGAAGGAATGTTGTATGAGTTACAGCTTCCTCCGGCAGAGCTCGTTCAGAGGAATCTTGAACAAGCTCGGGTATGAAAGTATTAGCAATGATGAGGTTCAGAAAATGCACTGGGATACTCTTCAATCGGAAATCGACAAATGGATTGCCGTCATCAAGAAATGCTCAAAATCTCTGTTCCCAGGCGAGTTGAAGCTCTGTGACTCCGTTTTCACCGATCATCCCTTCATATCTCATACAATCTTCAGCAATTTAACAAGAGCAGTCATCATCAAGCTTCTCAACTTCGCAAACGCCGTCGTCTTAACAAAGCGGTCCGCGGAGAAGATGTTCAAATTACTGGACATGTACGAAAGGATCTGCGAATTAATTCCAGTAATCAATGACTTCCCTGAAAATTGCAGAACGGAGCTAATTTCAGAAGCGGAAGGGGCAAAAAGTGGTATGGGAGAAGCAATAGTCGGAAGTTTCTACGACCTAGAAAGCTCAATCAGAAGCGACAACGCTAAAATTCCAGTTCCAGGAGGAGCAGTTCATCCATTAACGCGCTACATAATGAATTACCTAAAATACGCTTGCGAGTACAGAGAAACCCTAGAACAAGTCTTCCAATATATTGACCCTAAAACCGAAGAAGATCAATCAGCAAGAGTGGACGAGAACGACGACGCGTCGCTGAGAAATTCTCACCTCGCAAGTCAGATCGCTATGGTGATGGATCTGCTAGATACGAATCTGGTGATGAGATCAAAATTGTATCGCGACGCATCTCTTCGGTACATCTTCCTGATGAACAACGGAAGGTACGTAGTACAGAAAATCAAAGGCTCAACCGGAATCAAGGAGTTAATGGGCGACCGTTGGTGCCGCAAGCGATCAACGAATCTGCGACAGTACCACAAAAACTACCAGAGAGAAACATGGAGTAAGGTGCTGCAATGCCTGAACCACGAAGGATTGATGGTGAACGGGAAGGTATCAAAGCCGATTTTAAAGGAGAGATTCAAAAGCTTCAACTCCATGTTCGACGAAATACACAAAGTGCAGAGTAGTTGGGTGGTGAGCGACGAGCAGCTTCAATCGGAGCTTCGGGTTTCGGTGTCGGCGGTGATGATTCCGGCGTACCGTTCGTTCGTGGGGAGATTCAAGCAGCATTTCGATCAGGGAAGACAATCGGAGAAGTACATAAAGTATCAGCCTGAAGACATTGAAGTATTGATCGAAGACCTGTTCGACGGAAATACCGCTTCCATGAAAAAGAAATCGTAG 2031 46.13 MEKTPHPEKVSSLSTNFNRKFASLGSPGRTPDAADDAKSDSEKHPNDDDASSIDHYHHLLSQSEIASLFQEVDRFLHSLSTAADNAFNPIPDIPSSVHSLSNLVDSMTSRYNSTKNPAKLGRDPDRDSSFFEALDRISKIAIKLGEFNLCTATIPSLNRTTAALQRAMTLLDEEFNNLLKECKHLELESKPESKSDTKSSKQSSFKTNHELPDQHHRTVPECSESDKEDVYPSFSQETVSNMKRIAGTMIYAGYEKECCMSYSFLRQSSFRGILNKLGYESISNDEVQKMHWDTLQSEIDKWIAVIKKCSKSLFPGELKLCDSVFTDHPFISHTIFSNLTRAVIIKLLNFANAVVLTKRSAEKMFKLLDMYERICELIPVINDFPENCRTELISEAEGAKSGMGEAIVGSFYDLESSIRSDNAKIPVPGGAVHPLTRYIMNYLKYACEYRETLEQVFQYIDPKTEEDQSARVDENDDASLRNSHLASQIAMVMDLLDTNLVMRSKLYRDASLRYIFLMNNGRYVVQKIKGSTGIKELMGDRWCRKRSTNLRQYHKNYQRETWSKVLQCLNHEGLMVNGKVSKPILKERFKSFNSMFDEIHKVQSSWVVSDEQLQSELRVSVSAVMIPAYRSFVGRFKQHFDQGRQSEKYIKYQPEDIEVLIEDLFDGNTASMKKKS 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 10932453 10934483 - Carg06596-RA Car14g01275 161177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01275 676 MobiDBLite consensus disorder prediction 8 23 - -
Car14g01275 676 MobiDBLite consensus disorder prediction 208 231 - -
Car14g01275 676 Pfam Exo70 exocyst complex subunit 301 662 IPR046364 GO:0000145|GO:0005546|GO:0006887
Car14g01275 676 Coils Coil 168 188 - -
Car14g01275 676 MobiDBLite consensus disorder prediction 33 53 - -
Car14g01275 676 MobiDBLite consensus disorder prediction 1 53 - -
Car14g01275 676 MobiDBLite consensus disorder prediction 187 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01275 K07195 EXOC7, EXO70; exocyst complex component 7 - cpep:111790186 1317.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01275 Car-Chr14:10932453 Car15g00706 Car-Chr15:3929413 0 dispersed
Car14g01275 Car-Chr14:10932453 Car06g01419 Car-Chr6:10138010 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g00872 CST 10 653 EXO70 exocyst subunit family AT5G03540 76.6 5.9e-286 980.3
Car04g01504 CST 10 651 EXO70 exocyst subunit family AT5G03540 74.9 1.7e-277 952.2
Car07g00813 CST 1 639 EXO70 exocyst subunit family AT5G03540 68.3 4.6e-254 874.4
Car03g01010 CST 1 616 EXO70 exocyst subunit family AT5G03540 67.5 7.6e-241 830.5
Car07g00813 CST 1 639 EXO70 exocyst subunit family AT5G52340 75.3 1.3e-282 969.1
Car18g00872 CST 12 653 EXO70 exocyst subunit family AT5G52340 73.8 2.5e-270 928.3
Car04g01504 CST 12 651 EXO70 exocyst subunit family AT5G52340 73.6 1.7e-269 925.6
Car03g01010 CST 1 597 EXO70 exocyst subunit family AT5G52340 76.0 1.2e-264 909.4
Car07g00813 CST 145 632 EXO70 exocyst subunit family AT5G52350 61.3 1.2e-168 590.5
Car04g01504 CST 147 651 EXO70 exocyst subunit family AT5G52350 58.7 4.2e-166 582.0
Car18g00872 CST 147 653 EXO70 exocyst subunit family AT5G52350 58.9 2.7e-165 579.3
Car03g01010 CST 145 597 EXO70 exocyst subunit family AT5G52350 60.9 1.4e-153 540.4
Car01g00642 CST 1 624 EXO70 exocyst subunit family AT5G58430 65.4 4.6e-240 827.8
Car13g00010 CST 1 626 EXO70 exocyst subunit family AT5G58430 64.9 4.6e-240 827.8
Car13g00010 CST 1 625 EXO70 exocyst subunit family AT1G07000 51.7 3.6e-173 605.5
Car01g00642 CST 1 623 EXO70 exocyst subunit family AT1G07000 51.3 2.3e-172 602.8
Car06g01419 . 58 671 EXO70 exocyst subunit family AT5G13150 51.8 7.6e-169 591.3
Car14g01275 . 61 675 EXO70 exocyst subunit family AT5G13150 50.3 7.1e-167 584.7
Car04g02200 . 79 675 EXO70 exocyst subunit family AT5G13990 54.6 7.3e-186 647.9
Car15g00706 . 87 693 EXO70 exocyst subunit family AT5G13990 53.0 1.2e-183 640.6
Car14g01052 CST 12 611 EXO70 exocyst subunit family AT1G72470 64.1 1.7e-213 739.6
Car01g00006 CST 12 596 EXO70 exocyst subunit family AT1G72470 62.2 1.6e-200 696.4
Car14g01052 CST 12 609 EXO70 exocyst subunit family AT1G54090 62.1 2.7e-208 722.2
Car01g00006 CST 9 594 EXO70 exocyst subunit family AT1G54090 59.7 1.9e-193 672.9
Car14g01052 CST 9 610 EXO70 exocyst subunit family AT3G14090 63.4 2.5e-217 752.3
Car01g00006 CST 9 594 EXO70 exocyst subunit family AT3G14090 61.3 2.9e-202 702.2
Car11g00032 CCT,CST 14 648 EXO70 exocyst subunit family AT5G50380 63.1 4.5e-228 788.1
Car10g00053 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 62.2 3.8e-227 785.0
Car13g00651 CCT,CST 19 657 EXO70 exocyst subunit family AT5G50380 62.1 8.4e-227 783.9
Car18g00228 CCT,CST 22 661 EXO70 exocyst subunit family AT5G50380 62.8 8.4e-227 783.9
Car12g00281 . 17 684 EXO70 exocyst subunit family AT4G31540 73.4 4.0e-293 1004.2
Car05g00564 . 13 682 EXO70 exocyst subunit family AT4G31540 73.5 3.4e-292 1001.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005149 2 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01275 Car_Chr14 FPKM 9.784395 11.963172 8.109513 8.129179 5.245659 4.890172 5.788595 14.64962 12.837113 13.279663