Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01306 ATGGACAAAGCTGATGAATCAACCATTAAAAGCTTGATTTACCCTGTTGGATTTTATTCTACAAAGGCTAAAAATTTGAAGAAGATTGCCAAAATATGTCTTATGAAGTATGGTGGGGACATACCTAGATCATTGGAGGAGCTACTTCTACTGCCTGGGATAGGCCCTAAGATTGCACATTTGATCATGATTATGGCGTGGAACGATGTTCAGGGGATATGTGTCGATACTCACGTTCATCGCATTTGCAATCGGCTTGGATGGGTGTCTGGGAAAGGCTCGAAACAGAAAACTTCCTCCCCTGAAGAAACTCGAGTGGCATTAGAACTATGGCTGCCAAAGGAAGAATGGGTTCCAATTAATCCTCTTCTGGTTGGATTTGGACAGACTATTTGCACTCCCCTTAGACCCAAATGTGGAAATTGCAGTGTTAGCCACTTGTGTCCATCTGCATTCAAGGAGACTTCAAGCCCATCTCCCAAATTAAAGCGTTCAAGTTCCACCAAGTAG 510 43.14 MDKADESTIKSLIYPVGFYSTKAKNLKKIAKICLMKYGGDIPRSLEELLLLPGIGPKIAHLIMIMAWNDVQGICVDTHVHRICNRLGWVSGKGSKQKTSSPEETRVALELWLPKEEWVPINPLLVGFGQTICTPLRPKCGNCSVSHLCPSAFKETSSPSPKLKRSSSTK 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11072668 11076040 + Carg27246-RA Car14g01306 161208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01306 169 Pfam Helix-hairpin-helix motif 36 63 IPR000445 GO:0003677
Car14g01306 169 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 132 148 IPR004035 -
Car14g01306 169 ProSitePatterns Endonuclease III family signature. 39 68 IPR004036 -
Car14g01306 169 Pfam HhH-GPD superfamily base excision DNA repair protein 3 98 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01306 K10773 NTH; endonuclease III [EC:4.2.99.18] - csv:101212347 307.375
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1201 . . . . . . . . . . . Cma14g01469 . Car14g01306 . . Cpe03g01238 Bhi01g02693 . . . Hepe05g1227 . Lcy11g1140 . . . . . . . . . . Cone11ag0617 . . . Cme07g01894 . . Bda11g00458 . . . . Bma06g01418 . . Cmo14g01508 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010237 1 4 0 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01306 Car_Chr14 FPKM 0.331634 0.0 0.0 0.0 0.0 5.668033 5.536818 0.0 0.0 0.0