Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01329 ATGGAGCTCCGGGTGGCGAGTAAAGATGCTTGTCTCTCACTTCCACTGTCTCACAGATCGCCTCTCCGCTTCCAGTTGCCTTCCCCACCGCCGCATTCACTTCATCTGTCTCCCTCATGGCGGCCTTCGATCAAACGGACCATTTCTCTCTCCCGCAATCCGCACCAGAAGCGGGTCTCACAAATCATGGCGATGTCAGCTAGAAACAACGACGAATTTATTGCTGAATCTCCAGCAAAGGCGCTCCGGAGGATTCTGGAGATGCCTGGCGTACACCAAGGCCCCGCTTGTTTCGATGCTCTCAGTGCTAAGCTAGTCGAGAGAGCTGGTTTTCTTTACTGCTTTACCAGTGGTTTTTCTATATCGGCTGCTAGATTGGCGTTGCCCGACACAGGTTTCATATCATATGGTGAAATGTTGGATCAAGGGCAACTAATCACTCAATCGGTGTCCATTCCTGTCATTGGGGATGGTGATAATGGATATGGAAATGCAATGAATGTGAAGAGGACTGTTAAAGGATATATAAGAGCAGGCTTTGCGGGGATCATACTAGAAGATCAGGTATCTCCAAAAGCTTGTGGCCATACGCAAGGTAGGAAAGTGGTATCTAGAGAGGAGGCTGTGTTGCGGATAAAAGCAGCCGTTGATGCTAGAAAAGAAAGTGGTTCTGACATTGTCATTGTAGCACGAACTGATTCTCGTCAAGCAGTGTCTCTTAGTGAATCACTGTGGAGAGCTAGGGCCTTTGCAGATGCTGGAGCTGATGTTCTTTTCATTGATGCACTAGCTTCAAAAGACGAGATGGAGGCCTTTTGTAAAATCTCACCCAAAATACCCAAAATGGCCAATATGCTTGAAGGAGGAGGAAAGACACCCATTTTTAATCCTCTAGAACTGGAGGAAATTGGATATAAACTTGTTGCTTACCCTCTTTCCTTGGTTGGCGTATCAATTCGGGCAATGCAGGATGCACTGCTTGCAATTAAAGGAGGCCGATTGCCTTCTCCTGGAACCTTGCCAACTTTTGGAGAGATGAAGGAAATATTGGGTTTCAACTCTTACTATGAAGAAGAGAGGAAATATGCTTCTGCTGTTAGCCAGCCTTCAATAAAAGTGGACAGTAACATAAGCAGTCTTCAACGGAGGGTCGAAGATGATTCAGAGAAGAAAGACCAAAATCCTCAAGGCCCAGTTGTCGAAGTGATTACACCTGAGATATACAGAAGCCACGATGCAGATGAATCAAAAGGTCCCTTCTCTGGTATCTGGTCCCGGAGATTGAGAGTCAAAATAACTGGAAGAGATGGATTTGAGAGACTTGATGTCAGGATTCCTGCGGGATTCTTGGAAGGACTAACAAATATAGTTCCAGCTTTGGGAGGTGTGAATATCAAAGAACTGATGGACGATGCAGCTGGTGAAGTGGGAGGGAAACTTTTACTGGATTTTGTTGATGGCATGGGTGACCGAATTGAAAAGCAGAACAAGGATGAACCGTCCTTCTTCCTGTTGGTAGCGACCCAGCATTTTCCCGTCTTCACCTTCAGCATCTTCACTGCTCCACTTCCATTCTCCAATCGCGGCCCCCCTCTGCAGCTAACACTCTCTCCAACAGTTCACTCAACAAGTGTTGCCGGCTCGAATCATCGGTACGTTTCTCTGCACTACTCTGTTAATCGCCTTTGTACTTCATCTAGGCTCAAACTAAATTGTGGTATTATGGGTGAAACTCCTGCGAAGGCGCTTCGGAAGATCCTGGATTCGCCTGGTGTTCATCTTGGTCCTGCTTGCTTTGATGCTCTCAGTGCTAAGCTTATTCAGAGAGCTGGATTTTCGTATTGCTTTACTAGTGGATTTTCAATATCAGCTTCTAGATTGGGACTGCCAGATACAGGCTTTATGTCATATGGTGAAATGCTGGATCAAGGGCTACAAATTACTCAAGCCGTGTCAATTCCAGTCATTGGAGATGGTGATAATGGATATGGAAATGCAATGAATTTAAAGAGAACTGTTAAAGGATATATTCGAGCAGGCTTTGCAGGGATCATTCTTGAAGATCAGGTATCACCAAAGGCTTGTGGACATACACGAGGTAGGAAAGTAGTGTCTAGAGAGGAAGCGGTGTCATGTATAAGAGCAGCTGTTGATGCTCGAAAAGAAAGTGGCTCCGACATAGTTATTGTGGCTCGTACTGATGCTCGACAAGCTGTGTCCCTTGATGAAGCACTATGGAGGACAAAGGCCTTTGCTGATTCTGGGGCTGACATTCTTTTTATTGATGCACTAGCTTCAGTAGAAGAGATGAAGGCTTTCTGCAAAGTCTCTCCTGAAGTACCTAAAATGGCCAATATGCTTGAAGGAGGAGGTAAAACACCAATTCTCAGTCCTCTTGAACTTGCAGAAATTGGATATAAGGTTGTTGTTTATCCTCTTTCCTTGATGGGCGTATCCATGCGAGCGATGCAGGATGCGCTACTTGCAATTAAAGGAGGTCAAATTCCTTCTGAACGCATGCCATCTTTTGAAGAAATGAAGGAAATATTAGGTTTCAACAGTTATTATGAAGAAGAGGAGAAGTATGCTGCTGCTGCTAGTCTTCCTTCGCCAGGAGATGGATCAAAACATCCCCCTTCTGACATGTCACCCCGGAGATTGAGAGTCAAAATAACTGGAACAGATGGACTTGAGAGACTTGATGCTAGGATTCCTGCTGGATCCCTGGATACTCTAACCAGCATAGTTCCAGCGTTAGGAGGCATAAACATCAAACAACTGCTAGATGATGCAGCTGAGGAAGTAGGAGGAAAAGCGCTGCTGGATTTTACTGATACAACGGGTGACAGGATTCAGTGTGAGCCTTTGAAATGCCCTTTTAGCTAG 2886 45.5 MELRVASKDACLSLPLSHRSPLRFQLPSPPPHSLHLSPSWRPSIKRTISLSRNPHQKRVSQIMAMSARNNDEFIAESPAKALRRILEMPGVHQGPACFDALSAKLVERAGFLYCFTSGFSISAARLALPDTGFISYGEMLDQGQLITQSVSIPVIGDGDNGYGNAMNVKRTVKGYIRAGFAGIILEDQVSPKACGHTQGRKVVSREEAVLRIKAAVDARKESGSDIVIVARTDSRQAVSLSESLWRARAFADAGADVLFIDALASKDEMEAFCKISPKIPKMANMLEGGGKTPIFNPLELEEIGYKLVAYPLSLVGVSIRAMQDALLAIKGGRLPSPGTLPTFGEMKEILGFNSYYEEERKYASAVSQPSIKVDSNISSLQRRVEDDSEKKDQNPQGPVVEVITPEIYRSHDADESKGPFSGIWSRRLRVKITGRDGFERLDVRIPAGFLEGLTNIVPALGGVNIKELMDDAAGEVGGKLLLDFVDGMGDRIEKQNKDEPSFFLLVATQHFPVFTFSIFTAPLPFSNRGPPLQLTLSPTVHSTSVAGSNHRYVSLHYSVNRLCTSSRLKLNCGIMGETPAKALRKILDSPGVHLGPACFDALSAKLIQRAGFSYCFTSGFSISASRLGLPDTGFMSYGEMLDQGLQITQAVSIPVIGDGDNGYGNAMNLKRTVKGYIRAGFAGIILEDQVSPKACGHTRGRKVVSREEAVSCIRAAVDARKESGSDIVIVARTDARQAVSLDEALWRTKAFADSGADILFIDALASVEEMKAFCKVSPEVPKMANMLEGGGKTPILSPLELAEIGYKVVVYPLSLMGVSMRAMQDALLAIKGGQIPSERMPSFEEMKEILGFNSYYEEEEKYAAAASLPSPGDGSKHPPSDMSPRRLRVKITGTDGLERLDARIPAGSLDTLTSIVPALGGINIKQLLDDAAEEVGGKALLDFTDTTGDRIQCEPLKCPFS 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11233748 11249183 + Carg22440-RA Car14g01329 161231

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01329 961 MobiDBLite consensus disorder prediction 379 394 - -
Car14g01329 961 MobiDBLite consensus disorder prediction 377 399 - -
Car14g01329 961 Pfam Phosphoenolpyruvate phosphomutase 587 829 - -
Car14g01329 961 Pfam Phosphoenolpyruvate phosphomutase 95 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01329 - - - bhj:120091220 857.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01329 Car-Chr14:11233748 Car20g00524 Car-Chr20:2890073 1.95E-08 dispersed
Car14g01329 Car-Chr14:11233748 Car02g00134 Car-Chr2:781227 1.85E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1119 . . . . . . . . . . . Cma14g01497 . Car14g01329 . . Cpe03g01257 Bhi01g02631 Tan10g1238 . . . . Lcy11g1233 . . . . . . . . . . Cone11ag0627 . . . Cme07g01856 . Blo07g00101 Bda11g00470 . . Bpe13g00728 . . . . Cmo14g01532 . . . . . . . . . . . . . Cla07g01581 Cam07g1678 Cec07g1773 Cco07g1736 Clacu07g1662 Cmu07g1628 Cre07g2002 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004913 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 2 1 2 1 2 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01329 Car_Chr14 FPKM 0.0 0.617222 0.727548 0.0 1.862756 1.371113 1.367695 0.763267 0.404491 0.507642