Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01330 ATGAAGAAGGTCTTTGATCAAACTGTTAGAGACATAAAGAGAGAGGTCAATAAGACCGTGCTCAAAATTCCGAAAATAGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGGCCTCATGGATCCCTTCTTGCAGATATAGCAGAGGCAACTAGAAATCATCATGAATATCAATTGATCATGGGAATAATCTGGAAGCGGATTAATGATACGGGCAAGAATTGGAGGCATGTCTATAAGGGGTTGACTGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGAGTCATAGACGACATCAGAGAACATGCATATCAGATATCGACCTTATCGGAATTTCACTACATCGATTCGAGTGCGAGGGATCAGGGTAACAATGTTAGAAAGAAATCTCTAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCGTTGAGGTCAGACAGAAAGCTGCTGCTAATAGGGACAAGTTTCGCAGCCCGTCATCCATGAGCCGTATGTATAGATCAAGAACAGGAGGATATGACGAGCGCTATGAAGGACGATATGGAAGCTATGATGGAGACAAAAATGTTGATTCTTTTGGGAGGGAAAGGGACTATGGTTTCAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATAGTCGTGGTTATGAAGGACGCTATAACAGAGATGGTTATAAGGATGATGATTATCGTGGAAGAAGTCGAAGCATTGATGGTCATCAGTATGGTTCAAGGAGCAGGAGCTTTGACAGAGATGGAGAACGTACATATGATGACGATGGTCACGTTTCTTCTCGCAACAATCGTGCCAGAGCACACGAGCCATCTCCGGTTGGAAGGAAGCTTGAACGTAAATTTTCGGAACAGAATCTTAGTTTCCCGCCTAGTTATGAAGAAGCTATGAATGAATCTGGAAGTTCTGTGCATAGTCAAAGAGATGTAGAAGCTCCATCAACTACAGCTCCAAGAGCTTTTCCTCCACCAACGTCCAGTACTCCGAGCCAGCCAACTAGTCATGGAACCTCTACATCCCCACCTACCCAGGGATTTGATCGGCCTGATGAATTTGACCCCCGGGGTTCCGTTCGAGCTGCTCCGGCCTCGAGCAGTTCGGAGACGAATTTATTCGACTCCTTGGCCTTAGTGCCTGTTGAGCCAGTAACATCAACTGCAGACTCCAAGAGTTGTGTTCGGAAAAGCTCTGCGGAGGACCCATTTGGTGACTCGTCTTTTAAAGCCGTTCCTTCCTCTGGTGTCCAAGATCAAGCAGATTTTCCTCATGGGGAATCGGGTTCTGCAGCATCTTACTCTACACCGGACATCCCTGTTCAACCTCAACCGAACTCGCACCATCCTCGTGAAGAGTCGCTGCTACATCAAGATATTGGTGTACTGGCTGATCTCCTTCCTCCTCCTGAAAGTTTACCAACTGTTGTTTCACAGCCCACATTTACAATATCAAACCAACCAGCACAACCAAATTTTTCAGCTGTATCTGGCTTGCCTGCACAGCCAAATTCTAACTTGGGGAACTATCAGCAATATGGAAGTATTGCTCCTATGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTTGGCAATGGGATGTTCATAACACAGGGAGGAACACCAGCTCATGTCAATTCATATATGGTTCCTCATGCTGGACCTAATACACAGCCCCACAATTTTGGATCCTCTCAGGACGGTTCTGCAGTTCCCACGAGTTCTCACGTCGCACTTCAAGCTTCCAGTTCGGTAGCTCCAGTGGCTTCTTCATTTCCTGTTGTACAATCTAACCCAGAGGTTATGGGTAGTTTTAATCCTCAAGCAGGAAACTATAATGCCATGGCTTACCAGCAAATTCCTCCAGTTGGATCACTTTCAGCGGCGTCTCAAGCTTCGAAGAATAAGTTTGAGACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGACTTGTCAATTTAAACATATCTGGACCTAAAGCAAACCCATTGGTGGACATTGGTGTTGATTTTGAATCCCTCGGTAGGAGGGAAAAGAGGATGGAGAAGCCTAGTATAGCTCCAATGGTATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATGGGCCGAGCCAGTGCAGGTGTACTAAGGCCTCCTCCAAATGCGATGTCGGGTACAGGTATGGGCATGGGAATGAGAGGCTATGGAGGTATGAATCAACCCATGGGAGGCATGGGGATGAATATGGGTATGGGGCAACAAGGAATTCAAATGCAGCAACCTCGAGCGAACATGCCCAGTGTATACAACCCAATGATGGGCGCTGGAGGTTATGCCCCGCAACAGCCACGGCATCTCATGAGTTTAGTTGGGACCAACAAGAGAGAAGAA 2409 46.16 MKKVFDQTVRDIKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAEATRNHHEYQLIMGIIWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSEFHYIDSSARDQGNNVRKKSLNLVALVNDKERIVEVRQKAAANRDKFRSPSSMSRMYRSRTGGYDERYEGRYGSYDGDKNVDSFGRERDYGFRDDRSGRNEDSYSRGYEGRYNRDGYKDDDYRGRSRSIDGHQYGSRSRSFDRDGERTYDDDGHVSSRNNRARAHEPSPVGRKLERKFSEQNLSFPPSYEEAMNESGSSVHSQRDVEAPSTTAPRAFPPPTSSTPSQPTSHGTSTSPPTQGFDRPDEFDPRGSVRAAPASSSSETNLFDSLALVPVEPVTSTADSKSCVRKSSAEDPFGDSSFKAVPSSGVQDQADFPHGESGSAASYSTPDIPVQPQPNSHHPREESLLHQDIGVLADLLPPPESLPTVVSQPTFTISNQPAQPNFSAVSGLPAQPNSNLGNYQQYGSIAPMNFQNQTEPGREFGNGMFITQGGTPAHVNSYMVPHAGPNTQPHNFGSSQDGSAVPTSSHVALQASSSVAPVASSFPVVQSNPEVMGSFNPQAGNYNAMAYQQIPPVGSLSAASQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPLVDIGVDFESLGRREKRMEKPSIAPMVSTINMGKAMGSGSGMGRASAGVLRPPPNAMSGTGMGMGMRGYGGMNQPMGGMGMNMGMGQQGIQMQQPRANMPSVYNPMMGAGGYAPQQPRHLMSLVGTNKREE 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11246969 11254410 - Carg22441-RA Car14g01330 161232

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01330 803 ProSiteProfiles ENTH domain profile. 18 150 IPR013809 -
Car14g01330 803 MobiDBLite consensus disorder prediction 339 354 - -
Car14g01330 803 MobiDBLite consensus disorder prediction 173 292 - -
Car14g01330 803 MobiDBLite consensus disorder prediction 294 322 - -
Car14g01330 803 MobiDBLite consensus disorder prediction 392 459 - -
Car14g01330 803 Pfam ENTH domain 25 146 IPR013809 -
Car14g01330 803 MobiDBLite consensus disorder prediction 152 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01330 K12471 EPN; epsin - csv:101208671 1094.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00073 Car-Chr8:428200 Car14g01330 Car-Chr14:11246969 1.45E-37 dispersed
Car12g00571 Car-Chr12:3820394 Car14g01330 Car-Chr14:11246969 3.42E-84 dispersed
Car14g01330 Car-Chr14:11246969 Car17g00540 Car-Chr17:5040410 7.81E-41 dispersed
Car14g01330 Car-Chr14:11246969 Car06g01388 Car-Chr6:9979136 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01330 Car_Chr14 FPKM 0.878065 1.004166 13.181661 11.039433 3.491034 5.332448 3.408968 6.278128 6.42854 6.511713