Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01340 ATGGAGAAGAAAAGAGCAGTAAAGGAAGAGTCTTTCCTTCAGCACCCTGTCCTTTTTCTCCTTGTTCTGGGCTTGGGCTTTATACTAGTCGACCCATTTAAAATGGGCCCAGTTGGAGCCCACGATTTCAGGCCCGTCAAGCATGACATTGCACCTTACAGCCAGGTAATGGGCCGTTGGCCCAAGGACAATCAGAGCCGTTTGGGCCTTGGAAATTTGGAATTCGAAGATCAGGTTTTTGGGCCTGAATCCTTGGAGTTTGATGCTTTGGGCCGTGGGCCTTACACTGGGCTTGCTGATGGCCGCATTGTTAGATGGATGGGTGAGGAAGTTGGATGGGAGACTTTTGCAATTGTCACAACAAAATGGTCAGAGAAGGAATGTGCACAAGGGGTTGATTCAACCACAGCCAAACAATGGAAGAATGAGAAGAAATGTGGAAGGCCACTTGGCCTAAGATTTGAGAAACAAACAGGGAATTTGTACATTGCTGATGCATATTATGGGCTTCTTATGGTTGGCCCTCAAGGGGGCATTGCCACTCCCTTGGCTACCCATGTTGATGGCACTCCCATTCTCTTTGCCAATGATCTTGATATCCATAACAATGGCTCCATCTTCTTCACCGACACGAGCAAGAGATATAATCGAGTTGATCATTTCTTCATCTTGTTGGAAGGAGAAGCTTCGGGTAGGCTTTTGAGATATGATCCTCCTACTAAAACAACTCATGTCGTGTTGAATGGCTTGGCCTTTCCGAATGGTGTGCAATTGTCTAAAGATCATAGCTTCCTTCTTTATACTGAAACTACTAATTGCAGATTAATGAAGGTGTGGCTTGGGGGATCAAGAAATGGAAAAGTAGAGGTAGTAGCAAATCTTCCAGGGTTTCCAGACAACGTAAGAAGAAACGAAAGAAACGAGTATTGGGTAGCCATAGATTGCTGTAGAACAAAAGCACAAGAGATACTGACACACAATCCATGGATAAGGAGTATCTATTTCAGGCTGCCATTGAGAATGAGCTTGCTGGCCAGGCTTATGGGCATGAAAATGTACACTGTCATCTCTCTTTTTAGTGAAAATGGAGAGCTTTTAGATGTTCTTGAGGATCAAAAGGGTGAAGTTATGAAGCTGATGAGTGAAGTTAGAGAAGTTCATGGGAAGCTTTGGATTGGAACTGTGGCTCATAACCATATTGCTACCTTGACTTACCCTTTACAAATTAACAACAACAACAAAGCTTAA 1248 43.91 MEKKRAVKEESFLQHPVLFLLVLGLGFILVDPFKMGPVGAHDFRPVKHDIAPYSQVMGRWPKDNQSRLGLGNLEFEDQVFGPESLEFDALGRGPYTGLADGRIVRWMGEEVGWETFAIVTTKWSEKECAQGVDSTTAKQWKNEKKCGRPLGLRFEKQTGNLYIADAYYGLLMVGPQGGIATPLATHVDGTPILFANDLDIHNNGSIFFTDTSKRYNRVDHFFILLEGEASGRLLRYDPPTKTTHVVLNGLAFPNGVQLSKDHSFLLYTETTNCRLMKVWLGGSRNGKVEVVANLPGFPDNVRRNERNEYWVAIDCCRTKAQEILTHNPWIRSIYFRLPLRMSLLARLMGMKMYTVISLFSENGELLDVLEDQKGEVMKLMSEVREVHGKLWIGTVAHNHIATLTYPLQINNNNKA 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11328587 11330560 + Carg24799-RA Car14g01340 161242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01340 415 Pfam Strictosidine synthase 196 281 IPR018119 GO:0009058|GO:0016844
Car14g01340 415 Pfam Strictosidine synthase-like, N-terminal 79 106 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01340 - - - csv:101216745 766.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00119 Car-Chr6:760452 Car14g01340 Car-Chr14:11328587 4.62E-22 dispersed
Car14g00474 Car-Chr14:2521249 Car14g01340 Car-Chr14:11328587 1.45E-95 dispersed
Car14g01340 Car-Chr14:11328587 Car15g00789 Car-Chr15:4487159 8.61E-75 dispersed
Car14g01340 Car-Chr14:11328587 Car06g00008 Car-Chr6:107478 1.97E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1250 . . . . . Bpe14g01059 . . . . . Cma14g01516 . Car14g01340 . . . . . . . . . . . . . . . . . . . Cone18ag0850 . . . . . Blo02g00445 . . . . . . . . . Cmo14g01550 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012010 0 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01340 Car_Chr14 FPKM 16.896507 16.32229 27.904898 31.086378 36.99374 33.19891 41.602871 19.509811 21.213604 20.939486