Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01343 ATGTCCTTTATCTTCTATGTAGGGCGCATAACGCTTCTGGCTGAGGGATGCCGAGGATCAATATCAGAGGTGTGGGAAATAGACGAGGACAAACATGATCCAGGAGCTGTGCTTCATACTTTGGGTTGGCCCTTGAATCATAAGACGTATGGAGGCTCGTTTTTGTACCACATGAAGGATAGACAGATTTCTATTGGCCTTGTAGTTGCTCTAAATTATCAGAATCCTTTCTTGAATCCTTATGAAGAATTTCAGAAACTAAAACATCATCCTGTCATCAAAGAACTTCTAGAAGGTGGGACAGTTGTGCAATATGGGGCTCGAACGTTAAATGAAGGCGGTCTTCAGTCTGTTCCATATCCAGTTTTCCCGGGAGGAGCAATTATTGGATGTTCAGCTGGCTTTTTAAATGTACCAAAGATTAAGGGAACACACACTGCAATGAAGTCGGGAATGCTGGCAGCTGAGGCTGCATTTGACACTCTTCATGGAGGCTTGAAAATGGATGTGTACTGGGATAGTTTGCGAGGTTCCTGGATATGGGAAGAACTATATCGAGCTCGGAACTATCGACCTGCATTCGAGCATGGTCTTATCCCGGGCTTGACCCTAAGTGCCCTGGAGCACTATGTGCTTAAAGGAAGGTCCCCTCTCACACTAAAGCATGGGAAACCTGACCACCAAGCTACAGATGTTGCAAGTTCACATACTCCGATCGAATATCCAAAGCATGATAATCTTCTGTCATTCGATGTGCCGACCTCGCTACACAGGAGCAACACAAACCATGAACATGATCAGCCAGCCCACCTTCGCTTAAGGGACCCTAAGATTCCCGAGGAAGTAAATTTGAAAGAATACGCTGCACCCGAGTCAAGATATTGTCCCGCACGTGTATACGAGTACATACCTGATGAAAACAACCAGATGAAGTTGCAGATTAATGCTCAGAACTGTCTTCATTGCAAGGCTTGTGATATTAAAGACCCGAAACAGAACATCGAGTGGAGCGTCCCGGAGGGCGGTGGCGGTCCTGGCTACTCCGTCATGTAA 1053 46.06 MSFIFYVGRITLLAEGCRGSISEVWEIDEDKHDPGAVLHTLGWPLNHKTYGGSFLYHMKDRQISIGLVVALNYQNPFLNPYEEFQKLKHHPVIKELLEGGTVVQYGARTLNEGGLQSVPYPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLAAEAAFDTLHGGLKMDVYWDSLRGSWIWEELYRARNYRPAFEHGLIPGLTLSALEHYVLKGRSPLTLKHGKPDHQATDVASSHTPIEYPKHDNLLSFDVPTSLHRSNTNHEHDQPAHLRLRDPKIPEEVNLKEYAAPESRYCPARVYEYIPDENNQMKLQINAQNCLHCKACDIKDPKQNIEWSVPEGGGGPGYSVM 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11341265 11347280 - Carg24796-RA Car14g01343 161245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01343 350 Pfam Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 247 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01343 K00311 ETFDH; electron-transferring-flavoprotein dehydrogenase [EC:1.5.5.1] - csv:101211771 670.233
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1268 Blo01g00193 . . Bda08g00158 . . . Bma05g01166 . . . Cma14g01519 . Car14g01343 Sed12g0692 . Cpe03g01278 Bhi01g01188 Tan10g1201 Cmetu06g1782 . Hepe05g1300 . Lcy11g1259 . . . . . . . . . Cone18ag0851 . . . . . . . . Bda13g00549 Bpe05g00974 . . . . . Cmo14g01554 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012450 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01343 Car_Chr14 FPKM 2.464912 3.122664 4.868161 6.501789 6.555857 6.577143 5.369802 8.25958 11.143656 12.458274