Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01365 ATGGCCAGAGCTCCCATTCACACTCCGGCCAACTTTCTGACCTCTCAAAGTCTCGAACCGTGCTACTTGAGACGCTATGGCTGCCTCCGCCCGCCATTTCTGAGCCAGACGCTACGGCCAGTTCCCGCAAGCAAGCTGGTGGTTGTTCGTGGTTGTGTAATCGCCGGTTACGCTCGCAAGTCGGTGGATTCTGATGGATTTGATCAGCTCACTGATGATAATGACTTCACCGTTTATTCGTCGGACGAATTGCGTTACGATGGAGATGTGACAGTTGATAATGAAGTTATTAAGAATTCAGGAACACCGAGAAGGATATCAATTGGAAGACTTGGAAGATTGAAATCTCAGAAAGTTAAGGCAATTGTGATGAAAGGTTCTAGGACAAAGGAAGAATTAAAAGATGATGTTCGTGTACCGACTACTGGAAATGGTTCACCGCATATATCCGATCGTCCGCACCCTAAAGCTAAAACTCTGGGAGAAAAGAAGAAGGTAAATACCTTAAGAAATGTAGAAAGATTTTCAAGATCATCTGAACTGCAAGATAAAGATCGACATCACAGAACTGCCCCCAGTTTATCAAGATCCGAGCAATCAGTCCCGGCAGCTTCTGCCACTTACTTCAGAGGATGGGGCTCTAGAGGGCCCTACGATTCGGAGTATGAATCAACCCAACCTAAACAACAGAAGTTTTCCTCAGAGAAGGGCTTTTACAGCCGAAAGTCATTTAAAGATCTTGGGTGCACTGAATATATGATTGAATCATTGAGGAGGCAGAATTTCCTACGGCCTTCACAGATTCAGGCCAAGGCATTTGCATCAGTTATTGAAGGAAAAAGTTGTATCATTTCTGATCAAAGTGGTTCTGGTAAGACATTAGCATATCTTGCACCATTAATCCAGCGTCTGAGGCAGGAAGAACTTCAAGGACTTCAAAAGTCTTCTCCACAAAGTCCCCAAATTGTTATCATTGTGCCGACTGCAGAATTGGCTTCTCAGGTCTTAAGCAATTGCCGATCCATTTCAAAATTTGGGGTGCCATTTAGGTCAATGGTTGTGACAGGCGGTTTCCGGCAGAAAACTCAACTTGATAATCTACAAGAAGGTGTTGATGTTCTAATAGCAACTCCTGGTCGTTTGATGCTTCTAATAAATGAAGGCTTCTTGCATGCTGTAATGGACGAGGTAGATATCCTTTTCAATGATGAGGATTTTGAAGTTGCATTGCAGACTTTAATGAAGTCTGCACCTGTTAACGCACAATATCTATTTGTGACTGCAACTTTACCCGTTGACATATATAATACATTAGTGGAAAAGTTTCCTGATTGTGAAGTGATCATGGGACCTGGAGTTCACCGGATAAGTCCTAGTCTGGAAGAGGTTCTTGTAGATTGTAGTGGTGAAGATGAGCAGAACAAGACACCGGACGCTGCTTTCTTGAATAAGAAAGATGCCCTTCTGCAGATTGCTGAAGGAACTCCAATTGAAACATGTAGAAGAGTTGAAAATGCATTGCAACGTTTTGATAAAAAAGGTAGCCGCTTGCAAGTTTTTCCATTTCATGCTGCCCTAGCAAGAGACTCACGGCTTGCAAATATGGAGGCCTTCACCAATTCTCATTCAAACCAAGTATCCAAGTTCTTGGTTTGTACAGATAGAGCATCACGTGGAATTGATTTTCCAAATGTGGATCATGTCATACTCTTCGACTTCCCTCGTGATCCTAGCGAGTATGTTCGCCGTGTTGGAAGAACGGCTAGAGGTGCTACAGGAAAAGGAAAAGCATTCATTTTCGTGGTCGGAAAGCAGGTATCGCTTGCGCGGAGGATAATCGAAAGAAACAGGAAAGGTCATCCATTGCATGATGTGCCATCTGCTTATGAGCTTACATACTAA 1902 43.43 MARAPIHTPANFLTSQSLEPCYLRRYGCLRPPFLSQTLRPVPASKLVVVRGCVIAGYARKSVDSDGFDQLTDDNDFTVYSSDELRYDGDVTVDNEVIKNSGTPRRISIGRLGRLKSQKVKAIVMKGSRTKEELKDDVRVPTTGNGSPHISDRPHPKAKTLGEKKKVNTLRNVERFSRSSELQDKDRHHRTAPSLSRSEQSVPAASATYFRGWGSRGPYDSEYESTQPKQQKFSSEKGFYSRKSFKDLGCTEYMIESLRRQNFLRPSQIQAKAFASVIEGKSCIISDQSGSGKTLAYLAPLIQRLRQEELQGLQKSSPQSPQIVIIVPTAELASQVLSNCRSISKFGVPFRSMVVTGGFRQKTQLDNLQEGVDVLIATPGRLMLLINEGFLHAVMDEVDILFNDEDFEVALQTLMKSAPVNAQYLFVTATLPVDIYNTLVEKFPDCEVIMGPGVHRISPSLEEVLVDCSGEDEQNKTPDAAFLNKKDALLQIAEGTPIETCRRVENALQRFDKKGSRLQVFPFHAALARDSRLANMEAFTNSHSNQVSKFLVCTDRASRGIDFPNVDHVILFDFPRDPSEYVRRVGRTARGATGKGKAFIFVVGKQVSLARRIIERNRKGHPLHDVPSAYELTY 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11547508 11553441 + Carg19586-RA Car14g01365 161267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01365 633 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 242 270 IPR014014 GO:0003724
Car14g01365 633 Pfam DEAD/DEAH box helicase 267 434 IPR011545 GO:0003676|GO:0005524
Car14g01365 633 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 459 633 IPR001650 -
Car14g01365 633 Pfam Helicase conserved C-terminal domain 499 590 IPR001650 -
Car14g01365 633 MobiDBLite consensus disorder prediction 137 202 - -
Car14g01365 633 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 273 448 IPR014001 -
Car14g01365 633 MobiDBLite consensus disorder prediction 151 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01365 K13179 DDX18, HAS1; ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13] - csv:101214337 1028.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02378 Car-Chr4:19068992 Car14g01365 Car-Chr14:11547508 4.98E-12 dispersed
Car14g01365 Car-Chr14:11547508 Car04g00782 Car-Chr4:4519148 1.20E-33 dispersed
Car14g01365 Car-Chr14:11547508 Car01g00053 Car-Chr1:291925 2.08E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g288 . . . . . Bpe14g01079 . . . . . Cma14g01547 . Car14g01365 Sed02g1093 . Cpe03g01293 Bhi01g01151 Tan10g1142 Cmetu06g0925 . Hepe05g1330 . Lcy11g1291 . . . . . . . . . . . Lsi05g01373 . . Cme06g00846 Blo02g00460 . . Bda13g00235 . . . . . . Cmo14g01583 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011458 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01365 Car_Chr14 FPKM 12.386921 12.998086 24.329748 22.643892 19.234867 17.722443 19.548824 8.960153 8.752539 11.509958