Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01374 ATGATGGCCCCTATTCGCACGTGTGGATTTGTTGATCCAGGTTGGGAGCATGGAGTTGCTCAAGATGAAAAGAAAAAGAAGGTTAAATGTAATTATTGCGGGAAAATAGTTAGTGGTGGCATATATAGGTTGAAGCAACATTTAGCTCGAGTTTCGGGGGAAGTTACGTATTGTGACAAGGCTCCAGAGGAAGTATATTTGAGAATGAGAGAAAACCTGGAAGGTTGTCGTTCCAATAAGAAACCAAGACAGTCGGAAGATGATGAACAATCATATTTGAACTTCCATTCCAATGATGATGAAGATGGTGGTTTACATGTGGCTTATAGAAATAGAGGAAGGCAATTGATGGTAAGCAGAAACGTCGGTGCTAACATGACTCCATTAAGGTCATTAAGATATGTTGACCCTGGATGGGAACACGGTGTGGCTCAGGACGAAAGGAAGAAGAAGGTTAAGTGCAACTACTGTGAAAAGATAGTTAGTGGAGGTATTAATAGGTTTAAGCAACATCTAGCCAGAATTCCTGGAGAGGTAGCCCCGTGTAAACACGCTCCTGAGGAAGTGTATCTTAAGATCAAAGAGAATATGAAATGGCATCGTACTGGCAGGAGAAATGGACAGACCGATGCCAACGAGTTATCGGCTTATTTTATGCAATCAGATAATGAAGAAGAGGAAGACGAGAAAGAGGAATCCTTGCATCATATTAGCAAGGAAAGATTGATCGATGGTGACAAAAGGTCGAGCAAAGATTTGAGAAGTAGCTTTAGGGGAATGTCCCCTGGTGGTGGATCTGAACCGTCCGTTAAAAGATCGAGGTTAGATTCTGTTTTTCTGAAAACCACCAAAAGACCAACCGAACAGTTGCACAAACAAGCATTAGTAAAAAGAGGAGCCAATAGGAGGTCACGCAAAGAAGTAATGTCTGCAATTTGCAAATTCTTTTGCTATGCAGGAATTCCTTTTCAGTCTGCAAATTCTGTTTACTTTCATAAGATGTTGGAAACAGTCGGTCAATATGGATCAGGCTTGGTTGGCCCCTCGTGTCAATTGATATCTGGTCGGTTATTACAGGACGAAGTGGCAACCGTTAAGACTTACCTGGTTGAATTGAAGGCCTCCTGGGCAATTACTGGTTGTTCTATACTGGTGGACAGTCGGAAGGATTCAGATGGTCGAACGTCTATAAACTTTTTGGTTTCTTGTCCCCGTGGTGTTTACTTCGTCTCATCAGTCGATGCCACTGAAGTAGCAGACGACCCTTCAAACTTGTTTAGGGTGCTTGATGCAGTGGTAGATGAAATTGGGGAGGAAAATGTGGTGCAGGTAATAACTGAGAATACTCCTAATTATAAAGCTGCTGGTAAAATTCTCGAGGAGAAGAGAAGAAATTTATTCTGGACGCCATGTGCGACCTATTGTATTGATCACATGCTTGAAGATTTTTCGAAATTGAGATCTGTGGAAGATTGCATGGAAAAGTGCCAAAAAATTACCAAGTTTATTTACAATCGGAACTGGTTGTTAAATTTCATGAAGAACGAGTTCACCCAAGGGTTGGAACTTCTTAGACCTGCAGTTACTCGGAACGCCTCAAACTTTGCTACTTTGCAGTGCTTGCTGGACCACAGAGCTAGTTTACGGAGAATGTTCGTCTCCAATGAGTGGACTTCTTGCAGGTTTTCTAAATCTGGTGAGGGACAAGAAGTAGAGATGATTGTATTAAATACTTCATTTTGGAAGAAGGTTCAATATGTTTGTAAATCTGTGGAACCAGTATTGCAAGTTCTTCAAAAATCCGATTCGGTTCAAAGCTTGTCGATGTCATCTATATATAATGACATGTACAGAGCCAAGTTCGCTATACAATCCATTCATGGCGACGACGCCAGGAAATATGGACCATTCTGGAATGTGATAGATAGCAACTGGAATTCTTTATTTTGCCACCCATTACATATGGCTGCTTTTTTCTTAAACCCATCATACAGATATCGTCCTGATTTCATGGCGCATTCGGAGGTGGTTCGTGGACTTAATGAATGCATAGTTCGGCTCGAGTCTGACAGTTCCAGAAGGATTTCTGCATCTATGCAGATTTCGGACTATAATTCAGCAAAATCTGATTTTGGAACTGAGCTGGCTATCAGTACAAGAACAGAGCTTGATCCAGCTGCATGGTGGCAACAACATGGAATTAGTTGTTTAGAACTGCAACAAATAGCTGTTCGCATACTGAGTCAAACATGTTCATCTTTGTGTTGTGAACACTACTGGTCCCCTTTCAAGAATGAACGCAGTCAAAAGAACAATGCTTTGTCTCAGAGAAAAATGGCTGATTTGTTGTATGTTCACTACAACCTTCGGCTTCGAGAACGCCAACTAAGAAAGCGATCTAGTGACTCCGTTTCTCTTGATGATATTCTTATGGAACATTTGTTGGATGATTGGATTGTGGAACCTCAGAAACAAGGCATGCAAGAAGATGAGGAAATCCTTTGTCCTGGAATGGAGACACTAGATGCATATGGGAATGATTTGATTGACTATGAGGACGGGACTACAGAGGCGGCGCGGAAGGGCTGTCTTCAACTGGTTTGTTTGACTAATGTCGAACCATTGGATGTCAACCCTGCCAATGGAGGCGCTTCCACCGACAATGATGCCGATGTTAAGTTCTACGACGATGAGCTAAGTGACTAA 2706 41.94 MMAPIRTCGFVDPGWEHGVAQDEKKKKVKCNYCGKIVSGGIYRLKQHLARVSGEVTYCDKAPEEVYLRMRENLEGCRSNKKPRQSEDDEQSYLNFHSNDDEDGGLHVAYRNRGRQLMVSRNVGANMTPLRSLRYVDPGWEHGVAQDERKKKVKCNYCEKIVSGGINRFKQHLARIPGEVAPCKHAPEEVYLKIKENMKWHRTGRRNGQTDANELSAYFMQSDNEEEEDEKEESLHHISKERLIDGDKRSSKDLRSSFRGMSPGGGSEPSVKRSRLDSVFLKTTKRPTEQLHKQALVKRGANRRSRKEVMSAICKFFCYAGIPFQSANSVYFHKMLETVGQYGSGLVGPSCQLISGRLLQDEVATVKTYLVELKASWAITGCSILVDSRKDSDGRTSINFLVSCPRGVYFVSSVDATEVADDPSNLFRVLDAVVDEIGEENVVQVITENTPNYKAAGKILEEKRRNLFWTPCATYCIDHMLEDFSKLRSVEDCMEKCQKITKFIYNRNWLLNFMKNEFTQGLELLRPAVTRNASNFATLQCLLDHRASLRRMFVSNEWTSCRFSKSGEGQEVEMIVLNTSFWKKVQYVCKSVEPVLQVLQKSDSVQSLSMSSIYNDMYRAKFAIQSIHGDDARKYGPFWNVIDSNWNSLFCHPLHMAAFFLNPSYRYRPDFMAHSEVVRGLNECIVRLESDSSRRISASMQISDYNSAKSDFGTELAISTRTELDPAAWWQQHGISCLELQQIAVRILSQTCSSLCCEHYWSPFKNERSQKNNALSQRKMADLLYVHYNLRLRERQLRKRSSDSVSLDDILMEHLLDDWIVEPQKQGMQEDEEILCPGMETLDAYGNDLIDYEDGTTEAARKGCLQLVCLTNVEPLDVNPANGGASTDNDADVKFYDDELSD 901
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11590347 11596019 + Carg19595-RA Car14g01374 161276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01374 901 MobiDBLite consensus disorder prediction 230 254 - -
Car14g01374 901 MobiDBLite consensus disorder prediction 221 275 - -
Car14g01374 901 MobiDBLite consensus disorder prediction 877 901 - -
Car14g01374 901 Pfam hAT family C-terminal dimerisation region 719 789 IPR008906 GO:0046983
Car14g01374 901 ProSiteProfiles Zinc finger BED-type profile. 9 65 IPR003656 GO:0003677
Car14g01374 901 ProSiteProfiles Zinc finger BED-type profile. 133 189 IPR003656 GO:0003677
Car14g01374 901 Pfam Protein of unknown function (DUF 659) 348 499 IPR007021 -
Car14g01374 901 Pfam BED zinc finger 15 50 IPR003656 GO:0003677
Car14g01374 901 Pfam BED zinc finger 139 174 IPR003656 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01374 - - - mcha:111009208 1692.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02396 Car-Chr4:19162477 Car14g01374 Car-Chr14:11590347 4.14E-16 dispersed
Car14g01374 Car-Chr14:11590347 Car15g00109 Car-Chr15:644718 1.23E-10 dispersed
Car14g01374 Car-Chr14:11590347 Car04g02834 Car-Chr4:21554642 3.36E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g258 Blo01g00023 . . . . . . Bma05g00985 . . . Cma14g01559 . Car14g01374 . . Cpe03g01303 Bhi01g01128 . . . Hepe05g1345 . Lcy11g1304 . . . . . . . . . . . Lsi05g01387 . . Cme06g00830 . . . . Bpe05g00794 . . . . . Cmo14g01593 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007263 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 4 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01374 Car_Chr14 FPKM 6.425698 6.68956 18.227434 21.274511 10.967222 13.367399 11.888692 20.644093 21.689852 21.203976