Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01384 ATGGAAACTGGAGAGTCTGCTCCCCCTTCCCTTGGTCCTCGCTATGCCCCGGACGACCCTACTCTTCCCAAACCCTGGAAGGGATTGATTGATGGGAGCACTGGACTGTTATACTACTGGAACCCTGAAACCAACGTAACTCAGTATGAAAAACCGGTCTCTTTGCCACCACCATTGCCGCTCGGTCCTCATCCTGGCGTCTCTTCGTCCAAGCCTACTTCAGTTTCGGAGGCTCATTCAATGCCATCGAATGGTGCATTAACACCGCATGTACAGAAAAATCATCATGTCCCTCAACAAGAAGGCCAATCAAATAGCCAACTTTCTCAACAACCTGGACATCTGATGTCACAACAGCACAGTTCTGTTGCCGGTCAGGCAACTGTTAATCACCATCCTGGCTTGCAGATGGCACCAGATGGGCGACAAAATAGCTCGCAATCGAACCAGGTCATGCAGCAACAGGGGCTGTTTGCAATGTCGTCACCACATCTTGGCCAGCAGCAGGTCATGCATCAAGGTCAGAAAATGGCACATGCAAATCCACAAATGTCTCAGCATCCAAATCAACAACCCCCGCAGAATCCAGGACAACCCTTACAGAATCCAGGACAACAAATACCACAACCATCAATCCAGCATTTAGGACAGCCAAGCATGCAAAATCAAACGCCATTAGTTGGGCAGCCTCAAGGTCCGCAACCACAATATGGTCAGCAGCAGCTTCAGTATATCGGCTACCAGCAAAGTGTGCATCCAAGTGTGCAGCACAATTTGCAGCAGCAAGTTCAACAAAGTCCTTTAGGTCAACCATTTGGCAATCACCTTGAGCAGAAGTCAGCTTTTCTGAAGAGAGAGGAGGATAATATCCAGTCAGGAAACCAAGTTGGCTTTTCTTCTTCCCAGTTTGAACAAAGTGGTGGTACCTCATCTATTCATAACCTTCATCCTGGAACCAATTCTTCTCAAATGCAACAATTTGGTTCAGCATCAGACCAAGCACGACAATTTGGTGGCTCTCCAGGAAACATACAACAGCAGAATCCTGTGGTTCAATTGCAGCATGCAGGTACTGAATTGGCTCATCGCCAACATCATTCTAGATTCCAAGATCAGATGAGCCCAGCAGTGATGCAGGGGCAGCAAACTAGTGCTGAAAATTTGCCAGGTAGAGCTGGAAATGAATATTACTTTGGCAGGAATGAAGGGCCTGGCGTTGGTCCACTTCAACCAAGGCTTGCAGCAATACCAATGGCAAGGAGCCAGCAGGTTCTGCATTTCATGTCCATTTCGTATGCAAATTGTCCTTTCTTTCAGGACACAAGGATGAGTGGTGTCTCATTTCCAACTGCAGCACCTGGCCATCCTAGTGGGACCAATTTTGCTGCTGGGCATTCACATAATATGTATAGCCATGGATCTGGTGGCCCACCATTGTCAAACAATGCTTTGATAGGCCCTCCTCATATTGGAGCTTCAGATGTCACTAATATGTCACCTGTTGAAGTTTATCGTCAACAGCATGAAGTAACTGCTACGGGTGATAACGTTCCATCTCCTTACATGACATTTGAGGCTACTGGCTTCCCTCCGGAGATACTGAGAGAGGCAAGTTTCACGATTGCTCGAACTTCTTTCAACTGGATATATTCTGCTGGTTTCTCTTCTCCAACGCCAATTCAAGCACAAACATGGCCAATTGCCCTGCAAGGTCGGGACATAGTTGCCATTGCTAAAACGGGGTCTGGAAAAACTTTGGGCTATTTGATTCCTGCCTTCATGCTTCTTAGGCAGTGCCGGAATAACCCTCAAAATGGACCAACGGTGTTGGTTTTGGCTCCTACTAGGGAACTTGCTACTCAAATACAAGATGAAGCTATTAAGTTTGGGAGGTCTTCCAGGGTTTGTTGTACGTGTTTGTATGGTGGAGCCCCAAAAGGTCCTCAGCTAAAGGAGTTAGAACGTGGTGCTGATATTGTTGTGGCAACTCCTGGCCGGCTCAATGATATACTTGAAATGAAGATGATTAAGTTTAGGCAAATTTCACTTCTTGTGCTTGATGAAGCTGATCGAATGCTTGACATGGGATTTGAACCCCAAATTAGAAAGATTGTGAATGAAATACCACCACGCAGACAAACACTTATGTATACAGCAACCTGGCCCAAGGAAGTAAGAAAAATAGCGAATGATCTTCTAGTCAATTCTGTCCAGGTGAATATTGGCAGCGTTGATGAACTTGCTGCTAACAAGGCTATAACTCAGTATGTTGAAGTCGTTCCACAGATGGAAAAACAGAGACGGTTAGAACAGATTCTTAGGTCCCAAGAACGGGGATCTAAGGTAATAATTTTTTGTTCCACGAAGAGGCTATGTGATCAGCTTGCACGAAGTCTTGGTCGTGGTTTTGGTGCTGCTGCAATTCATGGAGACAAATCGCAGGGGGAGCGTGATTGGGTATTGAACCAGTTTCGTAGTGGAAAGTCCCCGATACTAGTTGCCACAGATGTTGCTGCCCGTGGGCTTGACATCAAAGATATAAGAGTGGTGATCAACTATGATTTTCCAACTGGAGTTGAGGACTATGTCCATCGAATTGGGAGAACTGGGAGGGCTGGAGCAACGGGAGTGGCATATACCTTCTTCACCGAACAGGATTGGAAATATGCTGCTGATTTGATTAAACTACTGGAGGGTGCGGATCAGCATGTGCCTCCTGAGTTGCGAGATATGGCTATGCGTGGTGGGCCAAGTTTTGGGAAGGATAGGGGTGGGATGGGTCGTTTTGATGCAGTTATGGGCGGCAGTCGCTGGGATTCAGGAGGCCGGGGTGGCATGAGAGATGGTGGGTTTGGTGGTCGCGGTGGTGCAAGGGATGGTGGGTTTGGTGGCCGTGGTGGGATGAGAGATGGTGGGTTTGGTGGTCGTGGTAACATGAGGGATGGTACTGCTGGTGGACGAGGTGGGAGAGGCGATTTCTTTCCTACACGGGGTAGAGGACGGGGTTTCGGTGGCCCTGCTGGAGGTCATGTTGGTTGGGGAAGGGGGGGTGATCGTGGCGGGCCACATGATAGGTTCAGTAGTGTGGATGGTCGTGGACGTGGGCGTGGACAGAGTCGATTTGATAATAGAAACGACTTCAGTAATAGGAGTAGAGGCAGAAGTTATAGCCGCAGTCCTGAAAGAGTCCGAACATGGGGTTACAGTCGAAGTCGCAGTCGCAGTGGTAGTCGTAGTCGTAGTAGTAGAAGCTGGAGTAGAAGCCGTAGCAGGAGCAGGAGCAGGAGCAGAAGCAGAAGCAGAAGCAGGAGTCAGAGTTGGTCCCGCCGTCACAGCCGAAGCCGTAGTCGTAGCCGTAGCCACGATAATTACGGGCGTTCCCGTGCAGCGTCTCATGGCACACGAAAGAGCGGTTTTGACGATAGAGGTGATGCGGGGCAGGTTCCTCCTGTGGCGGCCAGCAGTAATATCGAGCCAGGGAAACCAGAAAATGGTGCAGAAGATACGAGCGATGGAACTGTTAATGCAGCACAGCTCAAGTGA 3543 48.69 METGESAPPSLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPVSLPPPLPLGPHPGVSSSKPTSVSEAHSMPSNGALTPHVQKNHHVPQQEGQSNSQLSQQPGHLMSQQHSSVAGQATVNHHPGLQMAPDGRQNSSQSNQVMQQQGLFAMSSPHLGQQQVMHQGQKMAHANPQMSQHPNQQPPQNPGQPLQNPGQQIPQPSIQHLGQPSMQNQTPLVGQPQGPQPQYGQQQLQYIGYQQSVHPSVQHNLQQQVQQSPLGQPFGNHLEQKSAFLKREEDNIQSGNQVGFSSSQFEQSGGTSSIHNLHPGTNSSQMQQFGSASDQARQFGGSPGNIQQQNPVVQLQHAGTELAHRQHHSRFQDQMSPAVMQGQQTSAENLPGRAGNEYYFGRNEGPGVGPLQPRLAAIPMARSQQVLHFMSISYANCPFFQDTRMSGVSFPTAAPGHPSGTNFAAGHSHNMYSHGSGGPPLSNNALIGPPHIGASDVTNMSPVEVYRQQHEVTATGDNVPSPYMTFEATGFPPEILREASFTIARTSFNWIYSAGFSSPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLIPAFMLLRQCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSRVCCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIKFRQISLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIANDLLVNSVQVNIGSVDELAANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKRLCDQLARSLGRGFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFTEQDWKYAADLIKLLEGADQHVPPELRDMAMRGGPSFGKDRGGMGRFDAVMGGSRWDSGGRGGMRDGGFGGRGGARDGGFGGRGGMRDGGFGGRGNMRDGTAGGRGGRGDFFPTRGRGRGFGGPAGGHVGWGRGGDRGGPHDRFSSVDGRGRGRGQSRFDNRNDFSNRSRGRSYSRSPERVRTWGYSRSRSRSGSRSRSSRSWSRSRSRSRSRSRSRSRSRSQSWSRRHSRSRSRSRSHDNYGRSRAASHGTRKSGFDDRGDAGQVPPVAASSNIEPGKPENGAEDTSDGTVNAAQLK 1180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11643573 11649020 + Carg19605-RA Car14g01384 161286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01384 1180 MobiDBLite consensus disorder prediction 165 238 - -
Car14g01384 1180 MobiDBLite consensus disorder prediction 67 129 - -
Car14g01384 1180 MobiDBLite consensus disorder prediction 1118 1142 - -
Car14g01384 1180 MobiDBLite consensus disorder prediction 1 28 - -
Car14g01384 1180 MobiDBLite consensus disorder prediction 1062 1083 - -
Car14g01384 1180 Pfam Helicase conserved C-terminal domain 765 873 IPR001650 -
Car14g01384 1180 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 685 693 IPR000629 -
Car14g01384 1180 Pfam DEAD/DEAH box helicase 558 728 IPR011545 GO:0003676|GO:0005524
Car14g01384 1180 MobiDBLite consensus disorder prediction 299 325 - -
Car14g01384 1180 MobiDBLite consensus disorder prediction 1017 1059 - -
Car14g01384 1180 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Car14g01384 1180 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 768 912 IPR001650 -
Car14g01384 1180 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Car14g01384 1180 MobiDBLite consensus disorder prediction 1084 1117 - -
Car14g01384 1180 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 565 739 IPR014001 -
Car14g01384 1180 MobiDBLite consensus disorder prediction 200 238 - -
Car14g01384 1180 MobiDBLite consensus disorder prediction 937 1180 - -
Car14g01384 1180 MobiDBLite consensus disorder prediction 165 191 - -
Car14g01384 1180 Pfam WW domain 22 52 IPR001202 GO:0005515
Car14g01384 1180 MobiDBLite consensus disorder prediction 49 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01384 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101206347 1627.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00954 Car-Chr5:9157375 Car14g01384 Car-Chr14:11643573 2.44E-15 dispersed
Car09g00020 Car-Chr9:115351 Car14g01384 Car-Chr14:11643573 1.08E-100 dispersed
Car10g00086 Car-Chr10:387970 Car14g01384 Car-Chr14:11643573 6.32E-141 dispersed
Car11g01364 Car-Chr11:11163729 Car14g01384 Car-Chr14:11643573 4.08E-18 dispersed
Car14g00599 Car-Chr14:3333751 Car14g01384 Car-Chr14:11643573 5.13E-19 dispersed
Car14g01384 Car-Chr14:11643573 Car19g00161 Car-Chr19:1470958 4.29E-104 dispersed
Car14g01834 Car-Chr14:14266770 Car14g01384 Car-Chr14:11643573 3.09E-63 dispersed
Car15g01255 Car-Chr15:9777417 Car14g01384 Car-Chr14:11643573 2.21E-61 dispersed
Car14g01384 Car-Chr14:11643573 Car06g01343 Car-Chr6:9628898 1.59E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g228 . . . . . . . . . . . Cma14g01570 . Car14g01384 . Cpe08g00137 Cpe03g01312 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01604 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003909 1 2 1 1 1 1 2 1 2 1 2 2 2 1 2 2 1 2 2 2 1 2 1 1 2 1 1 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01384 Car_Chr14 FPKM 8.055555 7.605811 5.392792 6.434915 3.463737 2.98961 3.38721 6.240042 7.058123 6.522675