Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01397 ATGGATATCATTTTTGTCAACAACAATACTGTTTTGGGTATCCTATGTTTTACCCTATTTACCTTGTTTGGAACTTGCTTCTCTAGAGCTTTTACAGCTAATTTTGTGTTTGGGGATTCATTGGTAGAGGTTGGAAACAACAACTACATTCCATCACTCTCCCGGGCAAACTACGAGCCCAATGGCATCGATTTCGGATGGCCGACTGGTCGATTCACCAACGGGCGAACCATTGTTGACATAATAGGCAAGTTTGTGATCTACATTGCATTACTAAGATCAACAAAAGACAGCAAACAAGAGTTCAATGTCTATTATGTTTATGTTCCCATCTTACCAGGTCAGGAGCTGGGCTTCGAGACATTCACTCCCCCGTACTTGGCGCCTTCCTCGACTGGACCCGTGATTCTTCATGGCGTCAACTATGCTTCTGGTTCAGCTGGAATCTTCAATAACACAGGAAAAATCTTTCTTGCTCGAATCAACTTGGTTGCACAAGTCGATAACTTTGCAAACAACAGACAAGATATCATCGACATGATTGGCCTTCCTGCTGCCATGGATTTGCTTAGAACTTCCATATTCTCCATAACCATTGGCTCAAACGACTTCATTAATAACTACTTTACACCAGTCCTCTCGGATTCAGGACACCGGTTGATTCCTCCAGAGTTGTTTGTTGGCTCCATGATTTCGAGTTACAGACTCCAACTCACAAGACTCTACAATCTAGGAGCCAGAAACATCGTAGTGGTAAACGTCGGACCAATCGGATGCATTCCATATCAGAGAGATTCAAATCCTTCATTAGGAAGCAACTGTGCAAATTCCCCTAACCTAATGGCTCAGTCATTCAACAACCAATTGAGAGGTCTAATCACAGAGCTCAGAGCTCAATTTCAGAATTCTAATTTCCTCTATGCAAATGCGTATCACATCGTTCAAGATATAGTTCAAAATCACGCATCATACGGGTTTGAGAATGCCGACTCGGCGTGCTGCCACATCGCCGGACGGTACGGCGGTCTTTTTCCCTGTGGACCGCCGTCGAGAGTGTGCGTAGACAGGTCGAAGTACGTGTTTTGGGATTCATTTCATCCTTCTGAAGCTACGAACTCCATAATCGCCAGGCGGCTCAAGGACGGCGACGCCAATGATATTTGGCCCATCAATATTCGAGAACTGGAGCGCTTTAACTAA 1200 44.5 MDIIFVNNNTVLGILCFTLFTLFGTCFSRAFTANFVFGDSLVEVGNNNYIPSLSRANYEPNGIDFGWPTGRFTNGRTIVDIIGKFVIYIALLRSTKDSKQEFNVYYVYVPILPGQELGFETFTPPYLAPSSTGPVILHGVNYASGSAGIFNNTGKIFLARINLVAQVDNFANNRQDIIDMIGLPAAMDLLRTSIFSITIGSNDFINNYFTPVLSDSGHRLIPPELFVGSMISSYRLQLTRLYNLGARNIVVVNVGPIGCIPYQRDSNPSLGSNCANSPNLMAQSFNNQLRGLITELRAQFQNSNFLYANAYHIVQDIVQNHASYGFENADSACCHIAGRYGGLFPCGPPSRVCVDRSKYVFWDSFHPSEATNSIIARRLKDGDANDIWPINIRELERFN 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11794261 11796408 - Carg19618-RA Car14g01397 161299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01397 399 Pfam GDSL-like Lipase/Acylhydrolase 35 378 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01397 - - - cmos:111458001 681.789
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01397 Car-Chr14:11794261 Car20g00978 Car-Chr20:11321667 2.75E-109 dispersed
Car14g01397 Car-Chr14:11794261 Car13g00683 Car-Chr13:8228665 5.56E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g58 . . . . . . . . . . . Cma14g01587 . Car14g01397 . . Cpe03g01324 Bhi01g01094 . . . . . Lcy11g1334 . . . . . . . . . . Cone4ag0103 . . . Cme06g00793 . Blo07g00140 . . . Bpe13g00700 . Bma06g01464 . . Cmo14g01617 . . . . . . . . . . . . . Cla05g00710 . . Cco05g0778 Clacu05g0767 Cmu05g0733 Cre05g0807 . Csa03g01522 Chy06g00758 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014157 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 0 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01397 Car_Chr14 FPKM 22.585548 23.506302 16.421743 14.522058 14.013412 14.231721 16.508488 13.540588 14.846426 18.376019