Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01399 ATGGTTTCCAGTAATCGAGCGACGCATTGGCATCAACAACAAGCACAGTCCTCGAACACGAATACCAGCAATTTCCGATCTCACCGTACAGATTCTATCAACAAAGCCATAGCGCAGTACACAGCCGATGCTCGTCTTCACGCGGTGTTCGAGCAGTCAGGTGAGTCTGGGAAATCTTTTGACTACTCACAATCTATAAGAACTTCGACGCAATCTGTGCCGGAGCAGCAGATTACTGCTTATTTGTCGAAGATTCAAAGAGGCGGCCATATCCAGCCCTTTGGATGTATGATAGCCATAGATGAGGCTAGTTTTCGGGTTATTGCATACAGTGAAAACGCTAGGGAATTGCTCGGTTTAACTCCCCAATCAGTGCCGAGTCTTGAAAAGCCTGAGATCCTCACAATTGGGACTGATGTACGGAATTTGTTCACTTCCAACAGTGCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATCACTTTGTTGAACCCTGTTTGGATTCATTCCAAGAATTCTGGTAAGCCTTTTTACGCAATTTTGCATAGGATTGATGTGGGAATTGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGCGCAGTCCAATCGCAAAAACTTGCGGTACGTGCTATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTTAGGGAGCTTACTGGATATGATAGGGTTATGGTGTATAAATTTCATGAGGATGAGCATGGTGAGGTTGTGGCTGAAAGCAAGAGGGCTGACTTAGAGCCATACATTGGATTGCATTATCCTTCTACTGATATTCCTCAGGCATCAAGATTTTTGTTTAAGCAAAACCGTGTCAGGATGATCGTTGATTGCAATGCCTCTCCAGTTCGTGTAATTCAGGAGCCAGGGCTTATGCAACATCTATGCTTGGTGGGTTCAACTCTTCGTGCTCCCCATGGCTGCCATGCTCAGTATATGGCCAATATGGGCTCCATTGCTTCGTTAGCAATGGCAGTTATTATCAATGGTAATGATGATGAAGCTATTGGCGGGCAAAACTCAACAAGGCTTTGGGGTTTGGTTGTATGCCACCATACTTCTGCTCGGTGTATTCCGTTCCCGCTTCGGTATGCCTGTGAGTTTCTAATGCAAGCCTTTGGGCTTCAACTGAATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTGAGGACTCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCCCCAACTGGGATTGTTACACAGAGTCCAAGCATCATGGACCTAGTAAAGTGTGATGGGGCAGCTCTCTACTATCAAGGGAAATATTACCCTCTGGGTGTTACGCCAACCGAGGCCGAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCAACTGGTTTAAGTACAGATAGCTTGGGTGAGGCTGGATATCCAGGGGCAGCCTTGCTAGGTGATGCAGTTTGTGGAATGGCTGTTGCTTACATCACAAAAAGGGATTTGCTATTTTGGTTCCGATCACATACAGCAAAAGAGATCAAATGGGGTGGCGCAAAGCATCACCCAGAGGATAAGGACGATGGTCAAAGAATGCATCCACGTTCATCATTCAAGGCATTCTTGGAAGTTGTAAAATCCCGTAGTTTACCATGGGAGAATGCAGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGACTCATTTAAGGAAGATGTGGCAATGACTTCAAAGGCAGTTGTGCACCCTCAGCTAGGGGATCTTGACTTGCAAGGGATCGACGAGCTCAGCTCAGTTGCAAGAGAAATGGTCAGGTTAATTGAGACTGCAACTGCCCCTATCTTTGCTGTAGATGCCGATGGTCATATCAATGGATGGAACGCGAAGATAGCTGAGTTGACTGGGCTTGCAGCTGAGGAAGCTATGGGGAAATCCTTAGTTCGTGATCTAGTGTATAAAGAATCTGAAGAAACAGTCGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGACAAAAATGTAGAGATAAAAATGAAGACATTTGGGCCGGAAGATCAAAGAACGCCAATTTTTGTGGTTGTAAATGCTTGCTCTAGCAGGGACTACACCGATAATATAGTTGGCGTTTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAATTTATTAGCATACAAGGTGATTACAAAGCAATCGTTCATAGTCCAAATCCTCTTATCCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACCGCCATGGAAAAGCTCACTGGATGGTCCAAAGAGGAGATAATTGGAAAAATGCTAGTAGGAGAAGTTTTTGGGAGTTGTTGTCGACTGAAGGGTCCAGATGCATTGACCAAATTTATGATTGTCTTGCACAGTGCAATTGGTGGGCAGGACAATGAAAAATACCCTTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCCTAACAGCAAATAAGAGGATGAATATGGAGGGTCAGATTGTTGGAGCTTTCTGCTTCTTACAGATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGGTTCGCTAGGATGAAAGAGCTGGCTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTCACTAACTCACTTTTGGAGGCTACAGATTTGAGTGAAGATCAAAAACAGTTCCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTGAAGATTATAGAAGATATGGATTTGGAATGCATTGATGATGGTACGATGGAACTTGAGAAGGGGGAGTTCTTATTGGGAAGTGTTATCAATGCTGTTGTTAGCCAAGTGATGATACTCCTCAGAGAAAGGAACTTACAGCTGATCCGTGATATACCAGAAGAAGTAAAGACTATGGCTGTCTATGGCGATCAAATGAGGATTCAACAGGTCTTAGCTGATTTCTTGTTGAATATGGTCCGTTACGCACCCTCTCCAGAAGGTTGGGTAGAAATACGTGTCTGTCCATTCCTGAAGCAAAATCCAGATGGACATACTCTTGCACACACTGAATTCAGGATTGTATGCCCTGGGGAAGGTCTACCACCTGAGTTGGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGCTTAGGCTTAAGCATGTGCAGAAAGATATTGAAGCTCATGAATGGTGAAGTCCAGTACATCAGAGAGTCTGAAAGGTGTTATTTCTTGATCACTCTCGAACTCCCCTTGACAGAGAGAGGCCTAAACGACATCGGTTAG 3396 44.14 MVSSNRATHWHQQQAQSSNTNTSNFRSHRTDSINKAIAQYTADARLHAVFEQSGESGKSFDYSQSIRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIDEASFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFTSNSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRADLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCNASPVRVIQEPGLMQHLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDDEAIGGQNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAEIKDIVEWLLAFHGDSTGLSTDSLGEAGYPGAALLGDAVCGMAVAYITKRDLLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKEDVAMTSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGHINGWNAKIAELTGLAAEEAMGKSLVRDLVYKESEETVDKLVSRALKGEEDKNVEIKMKTFGPEDQRTPIFVVVNACSSRDYTDNIVGVCFVGQDVTCQKVFMDKFISIQGDYKAIVHSPNPLIPPIFASDDNTCCSEWNTAMEKLTGWSKEEIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKYPFSFYDKKGKYVQALLTANKRMNMEGQIVGAFCFLQIASPELQQTLRMQRQQEKNRFARMKELAYICQEVKSPLSGIRFTNSLLEATDLSEDQKQFLETSVACEKQMLKIIEDMDLECIDDGTMELEKGEFLLGSVINAVVSQVMILLRERNLQLIRDIPEEVKTMAVYGDQMRIQQVLADFLLNMVRYAPSPEGWVEIRVCPFLKQNPDGHTLAHTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERGLNDIG 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11804661 11810485 - Carg19620-RA Car14g01399 161301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01399 1131 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Car14g01399 1131 Pfam His Kinase A (phospho-acceptor) domain 901 961 IPR003661 GO:0000155|GO:0007165
Car14g01399 1131 Pfam GAF domain 229 407 IPR003018 GO:0005515
Car14g01399 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1121 IPR003594 -
Car14g01399 1131 Pfam PAS fold 625 740 IPR013767 GO:0006355
Car14g01399 1131 Pfam PAS fold 756 875 IPR013767 GO:0006355
Car14g01399 1131 ProSiteProfiles Histidine kinase domain profile. 904 1124 IPR005467 -
Car14g01399 1131 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Car14g01399 1131 Pfam Phytochrome region 420 594 IPR013515 GO:0006355|GO:0009584
Car14g01399 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Car14g01399 1131 Pfam PAS fold 80 196 IPR013654 GO:0006355
Car14g01399 1131 MobiDBLite consensus disorder prediction 1 27 - -
Car14g01399 1131 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car06g01329 Car14g01399 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car13g00449 Car-Chr13:6899041 Car14g01399 Car-Chr14:11804661 0 dispersed
Car14g01399 Car-Chr14:11804661 Car18g00423 Car-Chr18:2652153 0 dispersed
Car19g00664 Car-Chr19:7904045 Car14g01399 Car-Chr14:11804661 0 transposed
Car14g01399 Car-Chr14:11804661 Car06g01329 Car-Chr6:9492019 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01399 K12121 - csv:101212197 2182.53