Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01401 ATGGGTGAAAAAAAGGGAGATGAGAAAATTACAGTGATAATAAGAGAAGTGAATGAAGAAAGAGACACAGAAATGGTGGAAAAACTGGAGAGAAGCTGTGAAATTGGGTGTAAATTAGGAGGGGCCTCCATTTTTACCGATATGATGGGCGATCCTCTTTGTAGGATCAGATTCTACCCACTTCATATTATGCTGGTGGCTGAGCTGCCGGAAAAGGGAGACGTCGTGGGAGTGGTTAGAGGCTGTATTAAGTCTGTGGGGACTGGCGGCGCCGCCGCCGGAGAAGCTAATACCACCAGGATTGGTTGCATATTGGGCCTTCGTGTTTCTCCTGCTCACAGGAGGTTGGGAATTGGGCTAAAGCTAGTACACTCAGTTGAAGAATGGGTAATAAGAAATGGAGCTCCCTATGCATTTCTAGCAATAGAGAAGAAGAACAAAGCCTCAAAGAATCTCTTCACTCGCAAATGCAACTACGTAAAATTCAGCTCATTGGTGATATTCAGACAGCCAATTGTGTTCCCAACAAAAGACATCTCTAATGGGGAAATAAAGACAGAGAAACTGAACATAGAGCAAGCAATTTCATTCTACACGAACTGTCTCACAGCTAAAGGAGTTTATCCAATGGATTTTGATGTGATTTTGAAGGAAAAACTGAGTATTGGCACATGGGTTTCTTATTTCAATCAAGAAGATTGGACCCATTTGATTTGTTCAGAGAAGGATTCAGAGATTTACCAGAGAATGCCAAGCTCTTGGGTGGTGTTTAGCATATGGAATACCTGCAAGGCATATAAGTTTCAGATAAGGGAATCAAAAAAAGATGAATTATTGTTACCTCTAAGGTTCTTGAAAAGTGCAAGAAAAAAGTTCATTTCCTGCTTCAAAATGCCAGATTCTGTGTCGTTTGGGAAGTCATTTGGATTCTTCTTCCTGTATGGGATATTTGGGGAGGGGGAGAGAGTCGGAGAGCTTGTCGAGTCGATATGGCTTTTCGCTTCGAGATTGGCTGAAGAAGAGAACGACTGCAAGGCCATTGTCACCGAACTATCTGTTTCTGATCCCATCATAAACCACGTCCCACAAAATAATAAATCCATGTCTCGCATCAACGATAACTGGTACCTGAAAAGATTGAGTGTACAGAGTAGTGATGATGAAAGGGATGAAATGTTGTTGTCAAAGGATATGGAAGCAGCTGCAAATGTGATTGTTGACCCCAGAGACTTCTAG 1236 42.15 MGEKKGDEKITVIIREVNEERDTEMVEKLERSCEIGCKLGGASIFTDMMGDPLCRIRFYPLHIMLVAELPEKGDVVGVVRGCIKSVGTGGAAAGEANTTRIGCILGLRVSPAHRRLGIGLKLVHSVEEWVIRNGAPYAFLAIEKKNKASKNLFTRKCNYVKFSSLVIFRQPIVFPTKDISNGEIKTEKLNIEQAISFYTNCLTAKGVYPMDFDVILKEKLSIGTWVSYFNQEDWTHLICSEKDSEIYQRMPSSWVVFSIWNTCKAYKFQIRESKKDELLLPLRFLKSARKKFISCFKMPDSVSFGKSFGFFFLYGIFGEGERVGELVESIWLFASRLAEEENDCKAIVTELSVSDPIINHVPQNNKSMSRINDNWYLKRLSVQSSDDERDEMLLSKDMEAAANVIVDPRDF 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11816919 11819225 - Carg19622-RA Car14g01401 161303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01401 411 Gene3D - 12 173 - -
Car14g01401 411 PANTHER ACYL-COA N-ACYLTRANSFERASES (NAT) SUPERFAMILY PROTEIN 10 411 - -
Car14g01401 411 CDD NAT_SF 64 140 - -
Car14g01401 411 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 12 162 IPR016181 -
Car14g01401 411 PANTHER N-ACETYLTRANSFERASE HLS1-LIKE ISOFORM X1-RELATED 10 411 - -
Car14g01401 411 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 12 180 IPR000182 GO:0016407
Car14g01401 411 Pfam Acetyltransferase (GNAT) family 69 159 IPR000182 GO:0016407
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01401 - - - csv:101215331 661.759
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01401 Car-Chr14:11816919 Car20g00848 Car-Chr20:6053828 1.14E-67 dispersed
Car14g01401 Car-Chr14:11816919 Car01g00163 Car-Chr1:835446 2.44E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g71 . . . . . . . . . . . . . Car14g01401 Sed12g0774 . Cpe03g01329 Bhi01g01087 Tan10g1074 Cmetu06g1614 . Hepe05g1384 . Lcy11g1339 . . . . . . . . . . . Lsi05g01594 . . Cme06g00787 . Blo07g00146 . . . Bpe13g00694 . Bma06g01468 . . Cmo14g01621 . . . . . . . . . . . . . Cla05g00704 Cam05g0770 Cec05g0779 Cco05g0772 Clacu05g0760 Cmu05g0726 Cre05g0800 . Csa03g01516 Chy06g00753 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013261 0 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4714 PF00583 Acetyltransf_1 8.70E-12 CL0257 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01401 Car_Chr14 FPKM 0.335446 0.312039 2.46654 2.368914 9.336623 10.604204 9.022026 0.1255 0.217053 0.312096