Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01418 ATGCAGGTCTGTTGCTCACCCGATCCACGCGTTAAAACAAACATCACAACCAGTGAAGAGTTCTTAGCTCGTCAAAATGGTGATCTAACGATCATGTATGATGTGACGAGAACATATGATTCAAGTTACTGGGCACAAGTCACAATTTCTAACCACAATCCTCTTGGTCGTCTTGATTATTGGAAATTGAGCTGGGATTGGATGAGGGATGAGTTTATCTATTCAATGAAAGGTGCTTATCCTTCTGTTGTTGATTCTACTGAATGCATTTTTGGTAGACAAGGCACTTATTATAGGGATTTAGACTTTTTCAATGTGTTAAGTTGTAAAAGAAGGCCTACCATTGTTGATTTACCTCCAACTAAGGCTAACGACACCACTCTGGGGTCGATCCCGTTCTGTTGTCGAAATGGGACGATCTTGCCATCGCATATGGACCCGAGCAAGTCGATTTCTGCATTTCAGATGCAAGTGTTTAAAATGCCACCAGATCTTAATAGATCTCAGATTACACCACCTCAAAATTGGCAGATTAGTGGCGTTCTTAACCCGACATATAAATGTGGTCAGCCAGTGAGAGTAAGTCCTAGCGAATTCCCTGACTCGAGTGGTTTACTGTTGAATTCGACTGCGGTGGCTAGTTGGCAGATTGTTTGCAATATTACACATGTAAAGAAGGACATCCCAAAGTGCTGTGTTTCGTTTTCGTCGTACTACAATGAATCTGTCATCCCGTGCAGAACGTGTGCTTGTGGATGCTCGCTTAACTCTGCTCGTACATGTAATGCTACCTCCCCTGCAATGCTACTCCCAGCTGAAGCTCTTCTTGCTCCTTTTGAGAATAGGACTGCTATGGCTGTTGCTTGGGCTGGTCTTAAACATTTCCCGGTTCCGAATCCGATGCCTTGTTCGGATAACTGCGGTGTTAGTATCAACTGGCATTTGTATACCGATTATAGAGACGGATGGAGTGCGAGGATCACTCTCTTCAACTGGGGCGAAGTGAGCTTTGCAGATTGGTTTGCTGCAGTTCAGATGAACAAAGCAGCACCTGGCTTCCAGGCAATGTACTCGTTCAACGCAACGACCTTGGAATTGGATGGTTCGAACAGTACTATCTTTATGCAGGGTCATCCCGGACTAAACTATCTCGTCGGAGAAACAGACGGAGTGAACCCAGCTAAGGATCCGCACGTACCTGGAAAACAGCAATCTGTAATCTCATTCACAAAGAACATACAAGGTCTTAACATGGCTGCCGGAGATGGGTTCCCCACCAAGGTGTTCTTCAATGGGGAGGAATGCTTACTTCCTAAAATACTCCCCACCAACGACAGCCGAAGAAACTTAGCTCGGTTCATTCCGAGCCTCCTAATGCTAGGATTCGTGTTCTTGTTCATACAGCAATAG 1410 44.96 MQVCCSPDPRVKTNITTSEEFLARQNGDLTIMYDVTRTYDSSYWAQVTISNHNPLGRLDYWKLSWDWMRDEFIYSMKGAYPSVVDSTECIFGRQGTYYRDLDFFNVLSCKRRPTIVDLPPTKANDTTLGSIPFCCRNGTILPSHMDPSKSISAFQMQVFKMPPDLNRSQITPPQNWQISGVLNPTYKCGQPVRVSPSEFPDSSGLLLNSTAVASWQIVCNITHVKKDIPKCCVSFSSYYNESVIPCRTCACGCSLNSARTCNATSPAMLLPAEALLAPFENRTAMAVAWAGLKHFPVPNPMPCSDNCGVSINWHLYTDYRDGWSARITLFNWGEVSFADWFAAVQMNKAAPGFQAMYSFNATTLELDGSNSTIFMQGHPGLNYLVGETDGVNPAKDPHVPGKQQSVISFTKNIQGLNMAAGDGFPTKVFFNGEECLLPKILPTNDSRRNLARFIPSLLMLGFVFLFIQQ 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11917877 11919286 + Carg19640-RA Car14g01418 161320

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01418 469 Pfam COBRA-like protein 43 222 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01418 - - - csv:101209258 897.116
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01315 Car14g01418 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01418 Car-Chr14:11917877 Car16g00854 Car-Chr16:6258208 0 dispersed
Car14g01418 Car-Chr14:11917877 Car06g01315 Car-Chr6:9408958 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g112 Blo01g00059 Blo12g00091 Bda03g01159 Bda08g00305 Bpe04g01104 . Bma04g01143 Bma05g01021 . . Cma06g01550 Cma14g01601 Car06g01315 Car14g01418 Sed02g1150 Cpe08g00164 Cpe03g01343 Bhi01g01058 Tan10g1052 Cmetu06g2109 . . . Lcy11g1368 . . . . . . . . Cone15ag0747 Cone7ag0119 Cone4ag0122 . . . Cme06g00765 . . . . Bpe05g00746 . . . . . Cmo14g01635 . . . . . . . . . . . . . Cla05g00680 Cam05g0747 Cec05g0753 Cco05g0753 Clacu05g0739 Cmu05g0704 Cre05g0778 . Csa03g01498 Chy06g00736 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00197 CCT,CST,ECH 100 499 COBRA Gene Family AT5G60920 81.0 8.6e-211 729.9
Car10g00271 CCT,CST,ECH 85 484 COBRA Gene Family AT5G60920 80.3 3.6e-209 724.5
Car14g01031 . 42 450 COBRA Gene Family AT5G60920 74.8 4.4e-199 691.0
Car01g00385 . 22 426 COBRA Gene Family AT5G60920 74.3 1.3e-193 672.9
Car10g00270 CST 48 445 COBRA Gene Family AT5G60920 68.4 7.4e-178 620.5
Car11g00198 CST 55 476 COBRA Gene Family AT5G60920 63.6 2.1e-172 602.4
Car01g00386 . 31 446 COBRA Gene Family AT5G60920 59.6 5.3e-152 534.6
Car13g00898 CCT,ECH 14 238 COBRA Gene Family AT5G60920 54.2 1.4e-72 270.8
Car04g00511 . 59 259 COBRA Gene Family AT5G60920 53.7 3.5e-63 239.6
Car04g00510 . 25 173 COBRA Gene Family AT5G60920 65.1 1.1e-59 228.0
Car10g00271 CCT,CST,ECH 55 481 COBRA Gene Family AT3G02210 73.5 1.0e-204 709.9
Car11g00197 CCT,CST,ECH 70 504 COBRA Gene Family AT3G02210 72.9 8.6e-204 706.8
Car14g01031 . 12 448 COBRA Gene Family AT3G02210 73.3 4.7e-202 701.0
Car01g00385 . 8 418 COBRA Gene Family AT3G02210 75.0 2.1e-197 685.6
Car10g00270 CST 20 448 COBRA Gene Family AT3G02210 66.1 3.3e-179 625.2
Car11g00198 CST 29 480 COBRA Gene Family AT3G02210 62.6 8.4e-175 610.5
Car01g00386 . 5 449 COBRA Gene Family AT3G02210 57.3 2.0e-152 536.2
Car13g00898 CCT,ECH 14 239 COBRA Gene Family AT3G02210 54.2 1.2e-72 271.2
Car04g00511 . 59 250 COBRA Gene Family AT3G02210 56.7 3.3e-62 236.5
Car04g00510 . 14 173 COBRA Gene Family AT3G02210 62.1 6.2e-61 232.3
Car10g00271 CCT,CST,ECH 55 483 COBRA Gene Family AT3G29810 74.9 2.3e-201 698.7
Car11g00197 CCT,CST,ECH 70 498 COBRA Gene Family AT3G29810 73.3 2.4e-198 688.7
Car14g01031 . 27 448 COBRA Gene Family AT3G29810 71.8 6.1e-194 674.1
Car01g00385 . 8 426 COBRA Gene Family AT3G29810 71.8 5.3e-190 661.0
Car10g00270 CST 31 429 COBRA Gene Family AT3G29810 66.9 1.6e-173 606.3
Car11g00198 CST 37 462 COBRA Gene Family AT3G29810 63.1 5.5e-171 597.8
Car01g00386 . 14 448 COBRA Gene Family AT3G29810 59.1 4.1e-150 528.5
Car13g00898 CCT,ECH 14 242 COBRA Gene Family AT3G29810 53.4 2.9e-71 266.5
Car04g00511 . 59 250 COBRA Gene Family AT3G29810 55.7 1.3e-63 241.1
Car04g00510 . 23 167 COBRA Gene Family AT3G29810 67.6 9.7e-59 224.9
Car10g00270 CST 32 356 COBRA Gene Family AT5G15630 84.0 2.3e-177 618.6
Car11g00198 CST 39 389 COBRA Gene Family AT5G15630 77.5 3.0e-172 601.7
Car11g00197 CCT,CST,ECH 83 413 COBRA Gene Family AT5G15630 74.4 9.9e-152 533.5
Car10g00271 CCT,CST,ECH 68 398 COBRA Gene Family AT5G15630 74.1 1.7e-151 532.7
Car14g01031 . 27 358 COBRA Gene Family AT5G15630 67.2 2.2e-143 505.8
Car01g00386 . 9 359 COBRA Gene Family AT5G15630 67.7 3.2e-142 501.9
Car01g00385 . 2 336 COBRA Gene Family AT5G15630 66.6 1.2e-141 500.0
Car04g00511 . 59 250 COBRA Gene Family AT5G15630 53.1 8.3e-58 221.5
Car13g00898 CCT,ECH 14 146 COBRA Gene Family AT5G15630 55.4 1.0e-47 188.0
Car10g00271 CCT,CST,ECH 55 261 COBRA Gene Family AT5G60950 58.2 3.2e-65 245.4
Car14g01031 . 25 218 COBRA Gene Family AT5G60950 62.1 4.2e-65 245.0
Car01g00385 . 18 198 COBRA Gene Family AT5G60950 61.9 7.9e-64 240.7
Car11g00197 CCT,CST,ECH 82 276 COBRA Gene Family AT5G60950 57.1 6.7e-63 237.7
Car10g00270 CST 44 224 COBRA Gene Family AT5G60950 56.4 2.7e-56 215.7
Car01g00386 . 8 206 COBRA Gene Family AT5G60950 53.5 2.8e-53 205.7
Car11g00198 CST 51 257 COBRA Gene Family AT5G60950 50.2 2.8e-53 205.7
Car14g01031 . 14 428 COBRA Gene Family AT1G09790 52.4 1.2e-133 473.8
Car10g00270 CST 36 427 COBRA Gene Family AT1G09790 53.9 3.9e-132 468.8
Car10g00271 CCT,CST,ECH 69 469 COBRA Gene Family AT1G09790 53.6 3.9e-132 468.8
Car11g00197 CCT,CST,ECH 72 484 COBRA Gene Family AT1G09790 52.0 8.6e-132 467.6
Car11g00198 CST 41 460 COBRA Gene Family AT1G09790 50.1 1.2e-128 457.2
Car01g00385 . 8 406 COBRA Gene Family AT1G09790 52.0 2.9e-127 452.6
Car04g00511 . 57 249 COBRA Gene Family AT1G09790 61.3 1.6e-69 260.8
Car04g00510 . 4 170 COBRA Gene Family AT1G09790 66.1 5.3e-65 245.7
Car06g01315 CST 38 635 COBRA Gene Family AT4G16120 66.4 1.1e-250 863.2
Car04g00880 CST 79 676 COBRA Gene Family AT4G16120 52.7 3.0e-197 685.6
Car14g01418 CST 1 465 COBRA Gene Family AT4G16120 66.7 5.3e-194 674.9
Car16g00854 CST 66 649 COBRA Gene Family AT4G16120 51.7 5.3e-194 674.9
Car14g01416 . 93 224 COBRA Gene Family AT4G16120 62.9 1.7e-43 174.9
Car06g01315 CST 13 656 COBRA Gene Family AT3G16860 60.6 1.1e-236 816.6
Car16g00854 CST 62 665 COBRA Gene Family AT3G16860 51.7 1.2e-190 663.7
Car04g00880 CST 65 673 COBRA Gene Family AT3G16860 50.5 1.6e-190 663.3
Car14g01418 CST 1 449 COBRA Gene Family AT3G16860 65.1 1.1e-178 624.0
Car14g01416 . 73 224 COBRA Gene Family AT3G16860 54.9 4.2e-42 170.2
Car06g01315 CST 16 647 COBRA Gene Family AT5G49270 59.8 7.4e-236 813.9
Car16g00854 CST 70 647 COBRA Gene Family AT5G49270 50.7 4.5e-193 671.8
Car04g00880 CST 79 676 COBRA Gene Family AT5G49270 50.7 1.9e-191 666.4
Car14g01418 CST 4 449 COBRA Gene Family AT5G49270 62.5 5.5e-175 611.7
Car14g01416 . 71 224 COBRA Gene Family AT5G49270 56.8 1.9e-45 181.4
Car04g00880 CST 2 697 COBRA Gene Family AT3G20580 57.7 3.1e-242 835.1
Car16g00854 CST 60 659 COBRA Gene Family AT3G20580 59.0 5.5e-231 797.7
Car06g01315 CST 34 652 COBRA Gene Family AT3G20580 54.4 8.6e-208 720.7
Car14g01418 CST 1 467 COBRA Gene Family AT3G20580 56.2 6.4e-163 571.6
Car04g00880 CST 67 698 COBRA Gene Family AT4G27110 61.0 4.3e-236 814.7
Car16g00854 CST 59 664 COBRA Gene Family AT4G27110 59.9 1.4e-229 793.1
Car06g01315 CST 31 652 COBRA Gene Family AT4G27110 52.4 3.8e-200 695.3
Car14g01418 CST 1 459 COBRA Gene Family AT4G27110 54.3 2.1e-158 556.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005453 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01418 Car_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0