Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01427 ATGAAGCTTTCACCATTTTTGTTCTCTTTTCTTCTGGCCCTTTCTGTATCTGCAAGCACTTTCTCGCCGGACACGCCTCTTGAATCTGCCGACGGTGGATTTGATTCTCTTGCGCTGGAGCCCTCCGGCGAATTTCCTTTGAGTGGACGGGGTGTTTTTAATGTAAATGATTATGGGGCTGTTGCTGATGGGAAGACGGAGAACAGCTTGGCGTTCATGGCGGCGTGGGAAGAAGCTTGTGCTTTCAAAGGAGACTCCATTTTCTTAATACCGGAGGGCACTTTCTTGGTCGCCGGAGTCACATTTTCCGGCCCATGTTTCAATAACCTCTCACCCAAAGTCCTCATTTTCGCCACTTTGATTGCTCCCACCAAACTCACCACCGACGTTTGGATCCACTTCCACTCCCTCCGCCACCTCCTCCTCACCGGCCTCGACGGATCCGCCGTTCTCAACGGCCAAGGCGCCCAAACCTGGTCCTTTGGCTCCGCCTGCCGCCGCCGCATGACTTGCCCCATTTTCACCACGTCTTTAAAGCTAACGGATGTATCACATGCGATAGTGAAAGACATAAGCCTAGTAGATAGCAAGGGCTTTCACGTAGCCATGCATGGGTGCGACCATATTCATCTTTATGGGTTTAATATTACGGCGCCTTGGAATAGTCAGAACACCGATGGCATCCATATTAGTAACTCCACCAATATCAACGTTGCCAATTCCCACATCGGAGTTGGTGACGATTGTGTTTCCATTGGACCGGGTAGCTTCGATATATTAGTTTCGAATATTAGATGTGGCCCAGGTCATGGAATCAGCGTTGGGAGCCTAGGGAGGTACAAGAACGAGATGGATGTGATAGGAATAAGAGTGGAGAATTGTACCATAAGTGATACTCAAAATGGAGTGAGGGTAAAGACATGGCCGGGAAATTATTCGAGTAATGCTGCTCATTTGACGTTTCGAAACATTGTGATGAACAATGTCTCAAATCCCATTATCATAGATCAACGTTATTGTCCTAACCATTCTTGTGACATGAAAGAGTTAGATATCGGGCGGTGTGTCAGCGAGAATGCTGGCCCCAAGGAGGATGGATTGCGAGATCCCACATTAGTGGAAGAGGGGAACGAAACATTCCTTATAAGGTCATCAAGTGTGAAGCTGAGTGAGATGAACATGAGAAACATCAGTGGAACTTACAACACAAAGTTGGCAGTAAACATAGACTGCAGTTCAACCATGCCTTGTAATAACATTCACCTTTCATACATCAATCTCACCGCCACTCACCCACCGGAGAAGTATGAACTTGGGCGCTTCAATTGCATGGGTGCTCTCAATACCTTCACAGTTCTTAATTCAACATTTTAG 1374 47.23 MKLSPFLFSFLLALSVSASTFSPDTPLESADGGFDSLALEPSGEFPLSGRGVFNVNDYGAVADGKTENSLAFMAAWEEACAFKGDSIFLIPEGTFLVAGVTFSGPCFNNLSPKVLIFATLIAPTKLTTDVWIHFHSLRHLLLTGLDGSAVLNGQGAQTWSFGSACRRRMTCPIFTTSLKLTDVSHAIVKDISLVDSKGFHVAMHGCDHIHLYGFNITAPWNSQNTDGIHISNSTNINVANSHIGVGDDCVSIGPGSFDILVSNIRCGPGHGISVGSLGRYKNEMDVIGIRVENCTISDTQNGVRVKTWPGNYSSNAAHLTFRNIVMNNVSNPIIIDQRYCPNHSCDMKELDIGRCVSENAGPKEDGLRDPTLVEEGNETFLIRSSSVKLSEMNMRNISGTYNTKLAVNIDCSSTMPCNNIHLSYINLTATHPPEKYELGRFNCMGALNTFTVLNSTF 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11956320 11958996 - Carg19649-RA Car14g01427 161329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01427 457 ProSitePatterns Polygalacturonase active site. 263 276 IPR000743 GO:0004650|GO:0005975
Car14g01427 457 Pfam Glycosyl hydrolases family 28 84 348 IPR000743 GO:0004650|GO:0005975
Car14g01427 457 Pfam Glycosyl hydrolases family 28 384 430 IPR000743 GO:0004650|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01427 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - csv:101213162 515.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01306 Car-Chr6:9368668 Car14g01427 Car-Chr14:11956320 0 dispersed
Car14g01427 Car-Chr14:11956320 Car19g00628 Car-Chr19:7688944 5.40E-94 dispersed
Car14g01427 Car-Chr14:11956320 Car14g01428 Car-Chr14:11959557 2.78E-79 tandem
Car14g01427 Car-Chr14:11956320 Car06g01305 Car-Chr6:9366223 8.32E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g149 . . . . . Bpe14g01113 . . . . Cma06g01540 Cma14g01608 . Car14g01427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo14g01644 . . . . . . . . . . . . . Cla05g00673 . . Cco05g0746 . . . . . Chy06g00728 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013780 0 1 0 0 0 1 2 1 1 1 0 1 1 1 0 2 1 0 1 1 0 1 1 1 1 1 2 0 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01427 Car_Chr14 FPKM 0.0 0.0 4.409684 5.535519 36.457047 38.657356 33.874084 10.08151 8.772151 10.14807