Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01428 ATGAAGACATGGGTTGCAGCATGCCACTCCAAGGGAGCTGCAAGAGTAGTTATTCCTGGGGGTACTTTTTTGATCAGTCAAATAGTGTTTGCAGGGCCATGCGCCTCGACAAGTCCTATCGTCGTTCAAATCGATGCGACCTTAAAAGGAGACATCGACCTGAGCAATTACGTCTCTAATGAATGGATATTGTTTGAGAAGATCAATGGCTTGATAATCACTGGCAGAGGTACTTTGGATGGACAAGGTGATGCTGTCTGGAAATACAACGACTGTGGTATGAATCCCACTTGCCAGAAGCTCCCTGTTAATTTGAAATTCAATGGCATCACAAATGTATTCATGAAAGGCATCAGTTCCATCAACAGCAAGGGGTTTCACATGTTCATCACGAACAGTGAGAACGTTCGGCTGAAAAAACTACACATAACGGCGCCAGACGACAGTCCCAACACTGATGGCATACATCTGAGCCGCTCCAACAAAGTGAAAATATCAAGATCAGTCATTTCCACTGGTGACGATTGCATCTCCCTGGGTCGAGGATCAATGAATGTCACCATCAACAAAATAACCTGTGGTCCTGGACACGGTATCAGTGTTGGAAGCCTTGGAAAATACGAAAATGAGGAGGACGTGCTCGGTGTCGTCATCAAGAACTGTACATTAATAAAAACAGATAATGGACTTCGGATCAAAACATGGCCAGACTCACCCCCGAGTGCAGCCTCGGGCATCCTATTCGAAGACATCAATATGATCGACGTCAAGAACCCCATCCTCATAGACCAAGAGTACAGCTGCTCAAAAACTAATTGCCAAAGGCCGCCATCACGAGTAAAAATCAGCGACGTTCATTTCATTAATGTCAAAGGATCCACAATCTCTTCAGTAGCAGTTCATCTCAAATGCAGTAAGCGGTTTCCATGCCAAAACATAGAGTTGTTTAACATCAATTTGAAATACAGTGGCCCTCCAAAGAAATCCTTGCCATTTGTTTCTACTTGTACCAATGCAAAAGTAGGCTACAGAGGAGTTCAATTTCCACCCCCTTGCAAATGA 1062 44.26 MKTWVAACHSKGAARVVIPGGTFLISQIVFAGPCASTSPIVVQIDATLKGDIDLSNYVSNEWILFEKINGLIITGRGTLDGQGDAVWKYNDCGMNPTCQKLPVNLKFNGITNVFMKGISSINSKGFHMFITNSENVRLKKLHITAPDDSPNTDGIHLSRSNKVKISRSVISTGDDCISLGRGSMNVTINKITCGPGHGISVGSLGKYENEEDVLGVVIKNCTLIKTDNGLRIKTWPDSPPSAASGILFEDINMIDVKNPILIDQEYSCSKTNCQRPPSRVKISDVHFINVKGSTISSVAVHLKCSKRFPCQNIELFNINLKYSGPPKKSLPFVSTCTNAKVGYRGVQFPPPCK 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 11959557 11961740 - Carg19650-RA Car14g01428 161330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01428 353 Pfam Glycosyl hydrolases family 28 8 340 IPR000743 GO:0004650|GO:0005975
Car14g01428 353 ProSitePatterns Polygalacturonase active site. 190 203 IPR000743 GO:0004650|GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01428 K01213 E3.2.1.67; galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67] - csv:101212922 645.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01305 Car-Chr6:9366223 Car14g01428 Car-Chr14:11959557 0 dispersed
Car14g01428 Car-Chr14:11959557 Car17g01018 Car-Chr17:8068514 2.26E-127 dispersed
Car14g01427 Car-Chr14:11956320 Car14g01428 Car-Chr14:11959557 2.78E-79 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g150 . . . . . . . . . . . . . Car14g01428 . . . . . . . . . . . . . . . . . . . Cone7ag0131 Cone4ag0136 . . . . . . . . . Bpe13g00673 . Bma06g01491 . . Cmo14g01646 . . . . . . . . . . . . . . . . . . . . . . Chy06g00727 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000368 1 4 0 3 4 5 5 3 3 8 3 4 4 4 4 5 4 2 4 3 2 3 3 8 11 6 8 2 6 2 124
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01428 Car_Chr14 FPKM 6.605263 6.407914 17.758392 18.001652 35.632385 36.737034 37.396824 20.44993 21.049339 21.131268