Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01458 ATGGCCCCGTCAAGAAAGTCCAGAAGTGTTAATAAGCGGTTATCTTCTGCTAATGAGGCCTTCTCAAGTAAATACGTGGAAGATGCTAGCAAAAGCAAGCAGAAGAAGAGGAAATTTGCTGACCTGTTAGGGCCTCAATGGAGCAAGGATGAGGTTGAGCAGTTCTATGAAGCATATCGTAAATACGGAAAAGATTGGAAGAAGGTAGCTGCTGCAGTAAGGAACCGTTCTACAGAAATGGTCAAGGCCCTTTTCACCATGAATAGGGCCTATTTATCACTTCCAGAGGGCACTGCTTCAGTTGTTGGGTTAATTGCAATGATGACTGATCACTACAGCGTACTGAGAGACAGTGAAAGTGAACAAGAAAGCAATGAGAATTCTGGAGCAAGAAGAAAACCTCAAAAGCGACTGCGTGGAAAATCACAAAATAACAACTCTAAAGGATTGGATGCACATTTTGGAGATGCTTCACAATCACAGTCATTTCCAACAAATTATGGCTGCCTGTCATTGTTGAAGAAGAGGCGTTCTGGTATTAAACCTCATGCTGTTGGGAAACGAACTCCACGCGTTCCTGTATCATATTCTTATGATAAAGATAGTAGAGAGAGGTTTTTTTCACCCTCCAGGCACAATAGCAAGCCAAGGGTTGATGATCCAAATGATGATGATGTTGCTCATGAGATAGCTTTAGTTTTAACAGAGGCTTCACAGCGAGATGGTTCTCCACAACTTTCACAAACACCAAATCCAAAAATTGAAGGTCATGTACTTTCACCTACCCGAAATGACAGGATGCAAAGTGAATCAGGCATGATGAATACGAAGTTTCGATGTAGTGAAATGGATGAAGGTGGTTGCGAATTAAGCTTAGGAAGCACTGGTGCTGATAATGCGGACTATGACCTGGGGAAAAATTCTCGTGAGATTCAGAGAAAGGGTAAAAGGTACCATGGAAAGAAGCCAGAAGTTGAAGAAAGTATGTACAACCACTTGGATGACATCAAGGAAGCTTGTAGTGGGACTGAAGAGGGACAAAAATCAGGCAGTTTGAGGGGAAAACTTGAAACTGCGGATTTGGATGTAAAATCTGTGAGATCCTCTTTTAAAGGTCCGAGGAAAAGAAGTAAGAAAGCTCTATTTGGAGATGAATGTTCAGCATTTGATGCACTGCAAACTTTAGCTGATTTGTCTCTAATGATGCCTGACGCTAATGCTGAGACTGAGCCTTCTGCAAAGGTTAAAGAGGAAAATCTTGATGTCATGCACAAGTCTAAAATAAAAGGGAATCATTCAGTTGCTGGAGCTGAAATCTCTGCTCTCAAAACATCTAAAAAGGTAAAAGCTTTTGGCAATAATGTTGGTCCTATTCTGGAATCTGAGAGAATTCAAGGATCCAATAACGGTAATCGAAAAAGGAAACTGAAGTCTTCTCCATTTAAGATCTCAGCTAAAGATGAAGTTAACAGTGATTCTCGTGTCGGTGACACTCTGAAAATCAAGGCTGCAGATGAAGCAAAAAGTTCTGTTGGTAAAGTTAAGCGTTCGCCTCATAATGCTGGGCTTGCAAAGTCTGGAAAATTATCAAAACCTCTAGATCATCACTCATCTTCCAGTACCGATCATAAAAGAGAAGATGGTGACTATGCTTTATCCACAGCACAAGTTCCATCAACTAATCCAATCAGCTTACCTACTGAAGTAAGGAGCAGGCGGAAGATGAACCTGTGGAAGTCACAAAGAGATTCAAAGACTTCAGATAACACTTCGATTGATCGACTTAATAGACCTGCTCAATCAATAGATGATAGACCAAATGATCTCAAGGAGCAGCATTCTAATTGTCTATCTTGGCATAAATTGCGTAGATGGTGTGTTTATGAGTGGTTCTATAGTGCAATTGATTTCCCATGGTTTGCCAAATGTGAGTTCGTAGAGTACTTAAATCACGTTGGATTAGGTCATATTCCTAGATTGACACGTGTCGAGTGGGGTGTTATTCGAAGTTCCCTTGGGAGGCCACGGAGATTCTCTGCTCAATTCTTGAAGGAAGAAAAACAGAAGCTAAATCAATATAGGGAATCTGTTAGGAAACACTATGCTGAACTTTGTGCAGGCACAAGGGAAGGACTTCCAACTGATTTAGCTCGGCCACTATCTGTTGGACAGCGTGTTATTGCCATTCATCCAAAAACAAGAGAGATCCATGATGGAAGTGTACTTACTGTTGATTATAGCAGGTGTCGTGTTCAATTTGACCGGCCTGAACTTGGGGTTGAATTTGTGATGGATATCGAGTGTATGCCTTTAAATCCAGTTGAAAACATGCCTGCAAATTTGTCAAGACATGGTGTGACACTTGGTAAAATATTTGGGAACCTCAACGAGGTCAAGATTAATGGCTTACTGAATGAGGCGAAGATTGAAGAATATATGAAATCAACCAGTAATGATAAACTTGATAGCACTGATGGTTCTGTGTTTGTTTCCCCCATCAACAAATTAATTAAACAAGCAAAGGTTGACCTTGGATGCTCTAATCTACAAGCTAAATTTGGGCTTAGTGAGACTGTCGGTATTCAACAGGAGGCAAGTTCCCAATCTTCTGCCCTTGCTCAAATTCAAGCAAAAGAAGCTGATGTTCATGCGCTTTCTGAATTGTCACGTGCACTTAGCAAGAAGGAGGTGGTAGTGTCTGAATTGAAGCGCTTGAATGATGAGGTGTTGGAAAACCAAATAAATGGAGACAACTTGCTCAAGGATTCAGAGAACTTTAAGAAGCAATATGCTGCTGTGCTATTACAATTGAATGAAGTTAATGAACAGGTTTCCTCTGCTTTGTATTGCTTGAGGCAGCGCAATACATATCAAGGGACTTTACCATTGATGTTCCTCAAGCCAGTGCATGATATGGGCGACTCTTGCTCTCATGCTCAAGAACCCAGTTCCCATGTGGCTGAAATTGTGGGAAGTTCCAGAGCAAAGGCTCAAACAATGATCGATGAGGCAATGCAGGCAATTCTAGCTCTGAAAAAAGGAGAAAGTAATTTGGAGAATATTGAAGAAGCCATTGATTTTGTAAGTAATAGACTCTCAGTGGATGATTTGGCCTTGCCAACTGTGAGATCAACAGCTGCAGATACTAGTAATTCCCCTCCAGTATCTCAGAATCATTTCAACGTGTGTACATCAAACCCATCTATTGCTGATCATGTAGTTGGTCCCAAGTCCAATGGCCTATCCGACAAGACTGAAGTGGAGATCCCTTCAGAACTTATTGCACACTGTGTAGCCACTTTACTCATGATTCAGAAATGCACAGAAAGACAGTTTCCACCATCTGATGTTGCTCAGGTATTGGATTCTGCCGTCAGTGGTTTGCAGCCTTGTTGTCCTCAGAACCTTCCACTATATGCGGAGATCCAGAAATGCATGGGAATTATAAGGAGCCAGATTCTTGCGCTCATACCCACATAG 3480 41.47 MAPSRKSRSVNKRLSSANEAFSSKYVEDASKSKQKKRKFADLLGPQWSKDEVEQFYEAYRKYGKDWKKVAAAVRNRSTEMVKALFTMNRAYLSLPEGTASVVGLIAMMTDHYSVLRDSESEQESNENSGARRKPQKRLRGKSQNNNSKGLDAHFGDASQSQSFPTNYGCLSLLKKRRSGIKPHAVGKRTPRVPVSYSYDKDSRERFFSPSRHNSKPRVDDPNDDDVAHEIALVLTEASQRDGSPQLSQTPNPKIEGHVLSPTRNDRMQSESGMMNTKFRCSEMDEGGCELSLGSTGADNADYDLGKNSREIQRKGKRYHGKKPEVEESMYNHLDDIKEACSGTEEGQKSGSLRGKLETADLDVKSVRSSFKGPRKRSKKALFGDECSAFDALQTLADLSLMMPDANAETEPSAKVKEENLDVMHKSKIKGNHSVAGAEISALKTSKKVKAFGNNVGPILESERIQGSNNGNRKRKLKSSPFKISAKDEVNSDSRVGDTLKIKAADEAKSSVGKVKRSPHNAGLAKSGKLSKPLDHHSSSSTDHKREDGDYALSTAQVPSTNPISLPTEVRSRRKMNLWKSQRDSKTSDNTSIDRLNRPAQSIDDRPNDLKEQHSNCLSWHKLRRWCVYEWFYSAIDFPWFAKCEFVEYLNHVGLGHIPRLTRVEWGVIRSSLGRPRRFSAQFLKEEKQKLNQYRESVRKHYAELCAGTREGLPTDLARPLSVGQRVIAIHPKTREIHDGSVLTVDYSRCRVQFDRPELGVEFVMDIECMPLNPVENMPANLSRHGVTLGKIFGNLNEVKINGLLNEAKIEEYMKSTSNDKLDSTDGSVFVSPINKLIKQAKVDLGCSNLQAKFGLSETVGIQQEASSQSSALAQIQAKEADVHALSELSRALSKKEVVVSELKRLNDEVLENQINGDNLLKDSENFKKQYAAVLLQLNEVNEQVSSALYCLRQRNTYQGTLPLMFLKPVHDMGDSCSHAQEPSSHVAEIVGSSRAKAQTMIDEAMQAILALKKGESNLENIEEAIDFVSNRLSVDDLALPTVRSTAADTSNSPPVSQNHFNVCTSNPSIADHVVGPKSNGLSDKTEVEIPSELIAHCVATLLMIQKCTERQFPPSDVAQVLDSAVSGLQPCCPQNLPLYAEIQKCMGIIRSQILALIPT 1159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12159916 12174656 - Carg20122-RA Car14g01458 161360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01458 1159 ProSiteProfiles SANT domain profile. 42 79 IPR017884 -
Car14g01458 1159 MobiDBLite consensus disorder prediction 116 162 - -
Car14g01458 1159 ProSiteProfiles Myb-like domain profile. 47 82 IPR001005 -
Car14g01458 1159 Coils Coil 1011 1031 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 529 550 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 553 567 - -
Car14g01458 1159 Pfam DIRP 630 731 IPR033471 -
Car14g01458 1159 MobiDBLite consensus disorder prediction 461 608 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 572 590 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 236 270 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 116 133 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 140 162 - -
Car14g01458 1159 Coils Coil 888 908 - -
Car14g01458 1159 Pfam Myb-like DNA-binding domain 46 82 IPR001005 -
Car14g01458 1159 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 82 IPR017930 -
Car14g01458 1159 Coils Coil 683 703 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 487 513 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 238 255 - -
Car14g01458 1159 MobiDBLite consensus disorder prediction 202 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01458 - - - csv:101221669 2080.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01277 Car14g01458 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01037 Car-Chr12:10237668 Car14g01458 Car-Chr14:12159916 2.74E-23 dispersed
Car12g01038 Car-Chr12:10248042 Car14g01458 Car-Chr14:12159916 4.94E-32 transposed
Car14g01458 Car-Chr14:12159916 Car06g01277 Car-Chr6:9170309 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g335 . . . . . Bpe14g01136 . . . . Cma06g01485 Cma14g01632 Car06g01277 Car14g01458 . Cpe08g00199 Cpe03g01374 Bhi01g00974 . . . Hepe05g1463 . . . . . . . . . . . Cone7ag0162 Cone4ag0158 Lsi05g01524 . . Cme06g00712 Blo02g00515 . Bda11g00533 Bda13g00178 . Bpe13g00656 . Bma06g01509 . Cmo06g01480 Cmo14g01669 . . . . . . . . . . . . . Cla05g00634 Cam05g0695 Cec05g0708 Cco05g0704 Clacu05g0690 Cmu05g0657 Cre05g0729 . Csa03g01442 Chy06g00683 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003565 1 5 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 2 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4719 PF06584 DIRP 3.50E-30 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01458 Car_Chr14 FPKM 3.030405 2.611142 1.115282 1.351624 0.43822 0.283679 0.356649 2.791821 3.663172 3.639969