Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g01459 | ATGAACCCGTACGGTCACTCTATGGAACCCTCTCACTCCGATCCTTCGCCTGAATGGACCACTTCCGGACCCGATACTGCTCATGGAGAGCCACTTTGGCCTTTGGGATCGAGGGAGCGGGAATCGTACCCTGAACGACCTGAAGAGACTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCTCGTGAGCGTAACGCGGTTTTAGGAGGTTCGAGACTTGCTGGAAGAGAGTATCCCGAACGAATAGGGCAGCCCGTGTGCCAGTACTATATGAGGACAGGAATGTGCAAATTTGGCGCTTCCTGTAAGTATCACCATCCTCAGCAGGAAAGAGGTTCTCTTAGCCCCGTCTCACTGAATTTCTATGGCTATCCACTACGACCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATTGGCAGTGTAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCGGCTGGCTTGCAGTTTCCAGCACCATCACCTATTCAGGTTACACCAGTGCCTGCACCCTCTGTTTATCCTCCTGTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGACCTTCATTGCTGTCAAGCCCGTATGTTCCCGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTTTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCCCCCAGTGCCCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCTCACGTTTCACCTTCTGCACCTGTTTATGCTGGATCCTATCAGCCCATGCCATCTGCTGGTCCCTCTAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCGGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCGCCAGAATTCGTTACTTCAAGTCCAGGTGTTGTCCTTAGCCAGCTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTCGACCACTCCATGGATCGACTTAGTTATAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCTTCAGAGTTGAAGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTACTAGTGGATTGGTTGGTTCAACTACATCGAGGACAGAAATGTATTCTCATTCAAGTGCTCAACGATCTTCCCAAACTTCTGGCCCGTCACAGAGCAGTACCTCCAGCACCACCAGTGTGGAAGGTCGTACTTGA | 1428 | 49.3 | MNPYGHSMEPSHSDPSPEWTTSGPDTAHGEPLWPLGSRERESYPERPEETDCIYYLRTGFCGYGSRCRFNHPRERNAVLGGSRLAGREYPERIGQPVCQYYMRTGMCKFGASCKYHHPQQERGSLSPVSLNFYGYPLRPGEKECSYYLKNWQCKFGATCKFHHPEPAGLQFPAPSPIQVTPVPAPSVYPPVQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSAPVYAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPEFVTSSPGVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELKPEHFSGSRKDSNPSRMSSSMSTSTSGLVGSTTSRTEMYSHSSAQRSSQTSGPSQSSTSSTTSVEGRT | 475 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 12187897 | 12190522 | + | Carg20123-RA | Car14g01459 | 161361 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g01459 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 296 | 324 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | MobiDBLite | consensus disorder prediction | 397 | 475 | - | - | |
| Car14g01459 | 475 | MobiDBLite | consensus disorder prediction | 418 | 475 | - | - | |
| Car14g01459 | 475 | MobiDBLite | consensus disorder prediction | 278 | 293 | - | - | |
| Car14g01459 | 475 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Car14g01459 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Car14g01459 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 165 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 298 | 323 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 345 | 369 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 49 | 73 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | ProSiteProfiles | Zinc finger C3H1-type profile. | 342 | 370 | IPR000571 | GO:0046872 | |
| Car14g01459 | 475 | MobiDBLite | consensus disorder prediction | 275 | 299 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car06g01276 | Car14g01459 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car10g00749 | Car-Chr10:3949481 | Car14g01459 | Car-Chr14:12187897 | 8.89E-99 | dispersed | |
| Car11g00844 | Car-Chr11:5062614 | Car14g01459 | Car-Chr14:12187897 | 2.80E-100 | dispersed | |
| Car14g01459 | Car-Chr14:12187897 | Car20g00206 | Car-Chr20:1182437 | 6.27E-18 | dispersed | |
| Car14g01459 | Car-Chr14:12187897 | Car06g01276 | Car-Chr6:9156655 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4720 | PF00642 | zf-CCCH | 1.30E-07 | CL0537 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g01459 | - | - | csv:101221033 | 813.142 |