Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01476 ATGTCTTTGAGGAGTATAATCCAGGAAATGAGATCCAGGTCCCGCCGTGTTGTTCAGGATGGTTCGACGGCTGAAGTCGGCGATGGTTTGGGGCAGAGCTGTTGGACTTACATGCCTCAGGAGTTGTTGAGAGAGATTTTGGTTAGAATCGAGAGCTCTGAGAATGTTTGGCCTCTGCGGAAGAGCGTAGTGGCCTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACTAAGGAGATTGTTAAAACTCCCGAGGTTTCTGGCAGATTGACGTTTCCTATTTCTGTGAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGAAATCGATCTGCACAAACTTATTTCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTGCATGTTGATGACATGTCCAAGGCAAGTGGCACCTTCGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGCTTTCAAAAAGCCGCTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCAGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCAGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCTAAGCCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAGTCGAATCATATGGATGATCAACCATCAGGATCTTCAACTGATCAGGAGGATCGAGTTTTAGTGCTTAGGAACAAGGCTGCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCGGTGAAAAACTTTCAGTTAGTCGCTTCACCTGAAAACGGACTTGCTGGACCTGAACACGAAAAGATTATCCTTCAATTTGGAAAAGTAGGAAAGGATATATTTACGATGGACTACAGATACCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGCAGTTTTGACACAAAGATCGCGTGTGAATGA 1164 46.13 MSLRSIIQEMRSRSRRVVQDGSTAEVGDGLGQSCWTYMPQELLREILVRIESSENVWPLRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGPRDLLLHCFIKRNRSAQTYFLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHVDDMSKASGTFVGKLRSNFLGTKFTIFDGQPPHAGAKLSKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSLSRIDFLPSLRFSWSKSNHMDDQPSGSSTDQEDRVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12260396 12264675 - Carg20140-RA Car14g01476 161378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01476 387 Pfam F-box domain 38 82 IPR001810 GO:0005515
Car14g01476 387 Pfam Tub family 96 382 IPR000007 -
Car14g01476 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Car14g01476 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car08g01080 Car14g01476 CCT
Car08g01080 Car14g01476 ECH
Car06g01262 Car14g01476 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01476 Car-Chr14:12260396 Car16g00326 Car-Chr16:2007663 3.83E-150 dispersed
Car08g00491 Car-Chr8:3119586 Car14g01476 Car-Chr14:12260396 2.69E-14 transposed
Car14g01476 Car-Chr14:12260396 Car17g00282 Car-Chr17:1737428 4.62E-38 wgd
Car14g01476 Car-Chr14:12260396 Car06g01262 Car-Chr6:9073124 0 wgd
Car14g01476 Car-Chr14:12260396 Car08g01080 Car-Chr8:7360312 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4723 PF01167 Tub 3.60E-109 CL0395 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01476 K19600 - csv:101217713 739.954