Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01494 ATGGCATCAATGGTCGTTAAGCCGAGTTGTTCTAGCACTATCAATCACGGGCCTTCCTCGATGACTGCCCAGGAAAAAGGGAGTAGGAATAAGAGGAAGTACAGAGCAGATCCACCTTTAGGTGATCTGAGTAAGATCGCCTCGTCATCTCAAGATGAATGCTCGAGTTATGAGTTTTCAGCTGAGAAATTTGAGAATAGTTCAAGTTTGGGGCAAACCAATGCGTGTGACCTTTGTAGCATTGGTCCCGAATTTTCTGCTGGATTGAAACTTGATCTTGGATTGTCCAATGGAGGCTCTTCTGACGTTGGGCTAAACTGGCCAAGTGGGGAATCAGAAGTTGATGAGTTCCAAGATGTTGATTGGAGTGACCTTACAGAAGCTCAGCTCGAAGAACTAGTTTTAAATAATTTGGACACAATATTCAAGAGTGCAATCAAGAAAATCATTGCTTCTGGATACACTGAAGAGGTTTCGATAAAAGCGGTGTCGAGGTCTGGCATTTGTTTTGGTTGTAAAGATACACTATCAAATATAGTGGATAACACCTTAGCTTTCCTTAAAAGTGACCAAGAAATTGATCATTCAAGGGAGCACTATTTTGAAGATTTACAGCAACTAGAAAAATATATTTTAGCCGAATTAGTTTGTGTTCTACGAGAGGTTAGGCCTTTCTTCAGCACTGGCGATGCAATGTGGTGGTTATTGATTAGTGACATGAATGTATCTCTAGCATGTGCAGTGGATAATGACCCATTTGATGCACTTGTCTGTGATGGGACTTCGAACGAGAGCTCGTGTGATTCTATCCCACAGTTAAAACCAGAAGCTAAAGGCTCTGAGATGAATCTACCTAAGCCTGTTAAGCCAATTTCTCCGATCAGCTGTGCTCATGCTTCTCAATCTGATGGACCAGCCACTCTAAGAGTTCCTAGTATTGCAAAACCAAAGGACCCATTATTTTCAAGTGGACCATTATCAGATAAAGAGTTGCAAAATTCCACCTCTGCTACGGCTGAGGAATCATATAGTGTGGCCGGAAACCCTCAAACTTCTGTGTCCGAAGAAAAAGTTGGGAGCAGTAGAAAGGGTCATTCTAATATATCTAAGAGAGAATACATGCTACGACAAAAGGCACTTCATGTGGATAAAAACTTTCGAACACATGGAACTAAGAGCTCATCAAGAGCTGGAAAGCTGACTGGTTTGGGGGGTTTAACGTTGGATAAGAAACTAAAATCTGTTTCAGGCTCCACTTCAGTTAACTTCAAGAACGCTTCACTGAAAATAAGCAAAGCCATGGGAATTGATGTGCCCCAAGACAATGGGAACGATAATGTTTCCACCATCGACATTCCTTCTTCCTCTCCATCATTTAACTTGGAAAACATTAACACCGTTTCTCCTTTTTCTAAGACCAATGTATCTCCAATGCCCAGTCCTAGTTCACCCCCTGCATTACCTGCAGCTAATACTTCTGGGCTACCAACAACTGATATTGATCTCTCTCTTTCTTTGCCCACTAAAAGCAATCAGCCCTCAGTGCCTATCAGCTGCAACGCTGAGTCTTCTACTAATAGTTTTGTTGAGAGACCTTATGAAAAGTCCCTTGGACAGTGGTTTCCGAAGGATAAGAAGGATGAGATGGTTTTGAAGCTAGTGCCAAGGGCTCGGGAATTACAAAGTCAGCTGCAAGAGTGGACGGAGTGGGCAAATCAAAAGGTCATGCAGGCTGCAAGGAGGCTAAGTAAGGACAAGGCTGAACTCAAGAATTTGAAACAAGAAAAGGATGAAGTTGAACGGCTGAAAAAGGAGAAGCAAACTCTGGAAGAAAATACCATGAAGAAACTTTCTGAGATGGAACATGCATTGTGCAAGGCTAGTGGTCAGGTTGAACTTGCTAACTCTGCTGTTAGGAGGCTTGAGATGGAGAATGCTGCACTACGGCAGGAGATGGAGGTTGCAAAATTACGTGCTGCAGAATCAGCTGCTAATTATCACGAGGTTTCTAAGAGGGAAAAGAAAACACTGATGAAAGTTCAATCTTGGGAGAAGCAGAAAATGTTGTTTCAGGAAGAACTCACAGCCGAAAAGCGGAAATTGAAACAACTAATACAGGAACTTGAGCATGCCAGGGATCTGCGGGAGCAACTTGAGGGTCGGTGGAAGTTGGAGGAGAGAGCAAAAGATGAGCTGCTCATGAAGGCTGCTTCATTGAGAAAGGAGAGAGAACAAATCGAAGATTCAGTGAAAGCAAAGGAGGATTCAATTAAATTAAAAGCAGAAAACAATCTTTTAAAATACAAAGACGATATCCAAAAGCTTGAAAAAGAAATCTATGCGTTGAGACTTAAGACTGATTCTTCAAGAATTGCAGCTCTTAAGAGAGGCATTGACGGAAGTTATGCCAGTAGACTTACAGATACCAGACATAGCACAGATCACAAAGAGTCCTCGACCCCGAATGCCTTGGAATCGATGAAGGATCTTTACGAGTACTCTGGAACTGGGGGTGTGAAGCGGGAACGGGAGTGTGTGATGTGCCTTTCAGAGGAGATGTCAGTAGTTTTTCTTCCGTGCGCCCATCAGGTGGTGTGCACAACCTGCAATGAACTACATGAAAAACAGGGTATGAAAGATTGTCCTTCTTGCAGGAGCCCAATACAGCGGCGTATTCCAGTTCGTTATGTTCGCTCGTAA 2700 42.93 MASMVVKPSCSSTINHGPSSMTAQEKGSRNKRKYRADPPLGDLSKIASSSQDECSSYEFSAEKFENSSSLGQTNACDLCSIGPEFSAGLKLDLGLSNGGSSDVGLNWPSGESEVDEFQDVDWSDLTEAQLEELVLNNLDTIFKSAIKKIIASGYTEEVSIKAVSRSGICFGCKDTLSNIVDNTLAFLKSDQEIDHSREHYFEDLQQLEKYILAELVCVLREVRPFFSTGDAMWWLLISDMNVSLACAVDNDPFDALVCDGTSNESSCDSIPQLKPEAKGSEMNLPKPVKPISPISCAHASQSDGPATLRVPSIAKPKDPLFSSGPLSDKELQNSTSATAEESYSVAGNPQTSVSEEKVGSSRKGHSNISKREYMLRQKALHVDKNFRTHGTKSSSRAGKLTGLGGLTLDKKLKSVSGSTSVNFKNASLKISKAMGIDVPQDNGNDNVSTIDIPSSSPSFNLENINTVSPFSKTNVSPMPSPSSPPALPAANTSGLPTTDIDLSLSLPTKSNQPSVPISCNAESSTNSFVERPYEKSLGQWFPKDKKDEMVLKLVPRARELQSQLQEWTEWANQKVMQAARRLSKDKAELKNLKQEKDEVERLKKEKQTLEENTMKKLSEMEHALCKASGQVELANSAVRRLEMENAALRQEMEVAKLRAAESAANYHEVSKREKKTLMKVQSWEKQKMLFQEELTAEKRKLKQLIQELEHARDLREQLEGRWKLEERAKDELLMKAASLRKEREQIEDSVKAKEDSIKLKAENNLLKYKDDIQKLEKEIYALRLKTDSSRIAALKRGIDGSYASRLTDTRHSTDHKESSTPNALESMKDLYEYSGTGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNELHEKQGMKDCPSCRSPIQRRIPVRYVRS 899
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12386132 12390106 - Carg20158-RA Car14g01494 161396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01494 899 Pfam Zinc finger, C3HC4 type (RING finger) 842 890 - -
Car14g01494 899 Coils Coil 572 619 - -
Car14g01494 899 MobiDBLite consensus disorder prediction 1 25 - -
Car14g01494 899 MobiDBLite consensus disorder prediction 1 47 - -
Car14g01494 899 MobiDBLite consensus disorder prediction 487 502 - -
Car14g01494 899 MobiDBLite consensus disorder prediction 326 357 - -
Car14g01494 899 Coils Coil 631 665 - -
Car14g01494 899 MobiDBLite consensus disorder prediction 262 369 - -
Car14g01494 899 ProSiteProfiles Zinc finger RING-type profile. 845 885 IPR001841 -
Car14g01494 899 Coils Coil 758 785 - -
Car14g01494 899 MobiDBLite consensus disorder prediction 470 502 - -
Car14g01494 899 Coils Coil 729 756 - -
Car14g01494 899 Pfam Family of unknown function (DUF6592) 137 248 IPR046527 -
Car14g01494 899 Coils Coil 680 721 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01494 - - - csv:101214366 1494.18
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01249 Car14g01494 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01494 Car-Chr14:12386132 Car16g01087 Car-Chr16:9334751 8.65E-10 dispersed
Car05g01025 Car-Chr5:9766511 Car14g01494 Car-Chr14:12386132 6.69E-70 transposed
Car14g00263 Car-Chr14:1249936 Car14g01494 Car-Chr14:12386132 1.06E-06 transposed
Car16g01085 Car-Chr16:9331660 Car14g01494 Car-Chr14:12386132 1.06E-44 transposed
Car06g00711 Car-Chr6:4375616 Car14g01494 Car-Chr14:12386132 8.19E-24 transposed
Car14g01494 Car-Chr14:12386132 Car06g01249 Car-Chr6:8997661 0 wgd
Car14g01494 Car-Chr14:12386132 Car08g00323 Car-Chr8:2075400 2.41E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g397 . . . . . Bpe14g01163 . . . . . Cma14g01661 Car06g01249 Car14g01494 . Cpe08g00228 Cpe03g01402 Bhi01g00890 . . . Hepe05g1501 . Lcy11g1476 . . . . . . . . . . . Lsi05g01477 . . Cme06g00668 . . . . . Bpe13g00635 . Bma06g01529 . . Cmo14g01705 . . . . . . . . . . . . . Cla05g00597 Cam05g0657 Cec05g0664 Cco05g0661 Clacu05g0650 Cmu05g0619 Cre05g0688 . Csa03g01393 Chy06g00636 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004013 2 1 1 2 2 1 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 3 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01494 Car_Chr14 FPKM 0.0 0.0 0.0 0.0 0.0 1.960963 0.0 0.0 0.0 0.0