Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01502 ATGGCTCAAATTTTAGCTCCATCCGTTCAATGGCAGCTGAGAACTAAGCAGACTTCTATGAGTGCAAGCTCCATTACCCCTAAGATGTGGACTTCTTTGCTTCTGAAGCAGAGCAGTAAAGTTGCAGTGAAGAGCTCTGCAAAGTTCAGAGTCTTGGCTCTCAAATCTGATGGCAGCACTATCAACAGGATGGAAGAGCTGCTTAATCTCGACGTTACTCCTTATACCGACAAAATTATTGCTGAGTATATCTGGATTGGAGGATCTGGCATTGATTTGCGTAGTAAGTCAAGGACCATATCGAAGCCTGTTGAACATCCATCTGAGTTACCAAAGTGGAACTATGATGGATCTAGTACTGGACAAGCACCTGGAGAAGACAGTGAAGTCATTCTATATCCTCAAGCAATTTTCAAGGATCCATTTCGTGGCGGCAACAACATTTTGGTTATTTGTGATGCATACACACCAGCTGGTGAGCCCATCCCTACAAACAAACGCCACAGAGCTGCTGAGATTTTCAGCAACAAGAAGGTTGTGGATGAAATTCCCTGGTATGGTATAGAGCAAGAGTACACCTTACTTCAAACAAATGTGAAGTGGCCTTTAGGTTGGCCAGTTGGAGCTTATCCTGGTCCTCAGGGCCCTTATTATTGTGGTGTTGGAGCTGATAAGTCGTTTGGCCGAGACATATCAGATGCCCACTACAAGGCTTGTTTATATGCCGGAATCAACATTAGTGGCACCAATGGAGAAGTCATGCCTGGCCAGTGGGAGTATCAAGTTGGTCCTAGCGTCGGGATCGAAGCTGGAGATCACATTTGGTGTTCTAGATACATTCTTGAGAGGATCACTGAGCAAGCCGGGGTAGTTCTCACACTTGATCCAAAACCAATTGAGGGTGACTGGAATGGAGCTGGATGCCACACCAATTACAGCACAAAGAGTATGAGGGAGGAAGGAGGCTTCGACGTCATAAAGAAGGCGATTCTGAATCTGTCTCTTCGACACAATGAGCATATCAGTGCCTATGGAGAAGGGAATGAGAGAAGGTTGACAGGAAAGCACGAAACAGCAAGTATCAACACCTTTTCCTGGGGAGTGGCTAACCGTGGCTGTTCGATCCGTGTGGGTCGTGACACTGAGAAGCAAGGGAAAGGTTATTTGGAAGACCGACGTCCTGCTTCAAACATGGACCCGTACGTCGTGACCTCACTGCTGGCCGAAACAACCTTACTGTGGGAGCCAACACTTGAAGCCGAGGCACTGGCTGCTCAGAAACTGTCATTGAAGACAGTGCCCCTTGATCAGTTATCATCTGATTATGAATTTATGCATACATTCTTCTTGTTTTCGGATGGATTCAGTCATCAATCTAAATACGACAACAGAGAAAGAACCAGAGAGTTGCGAGATTGCAAAGACGCCGTACTCCCGGAGATTTCTTATGCTTACATTTTGACCCAAGGTAGCGCCGTTAACGGCCGATTTGTCTCCCTCTCCGTCCGGCTACGCTCCTTACCTTCTTCAACCTTCGCCCCCTTAGGGCTTGACCATGCGCTAGGCCAACAATCAATCGCGACACTACGTCACAGGCTCGGACACCGTAGCGATCTGACTGCCACTGCCGATCCACCGATCCACTCTGAAATGTTTGAGCAATGGCGCGAAGCGATTGGTATAATTGATATCAAAGAATGCTGTGGATTGGTTCTTGCAAGGAAGATTAGAGCTAAACGAGGACGTACATTGAGCTCATTTTCACCTGGGTTGGGAATCTCCAGAGTGGGAAAGCGATTTCAGCCGCCATAG 1812 47.24 MAQILAPSVQWQLRTKQTSMSASSITPKMWTSLLLKQSSKVAVKSSAKFRVLALKSDGSTINRMEELLNLDVTPYTDKIIAEYIWIGGSGIDLRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRHRAAEIFSNKKVVDEIPWYGIEQEYTLLQTNVKWPLGWPVGAYPGPQGPYYCGVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWCSRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREEGGFDVIKKAILNLSLRHNEHISAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKQGKGYLEDRRPASNMDPYVVTSLLAETTLLWEPTLEAEALAAQKLSLKTVPLDQLSSDYEFMHTFFLFSDGFSHQSKYDNRERTRELRDCKDAVLPEISYAYILTQGSAVNGRFVSLSVRLRSLPSSTFAPLGLDHALGQQSIATLRHRLGHRSDLTATADPPIHSEMFEQWREAIGIIDIKECCGLVLARKIRAKRGRTLSSFSPGLGISRVGKRFQPP 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12423618 12429028 - Carg23831-RA Car14g01502 161404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01502 603 ProSitePatterns Glutamine synthetase signature 1. 115 132 IPR027302 -
Car14g01502 603 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 79 159 IPR008147 GO:0004356|GO:0006542|GO:0006807
Car14g01502 603 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 163 517 IPR008146 GO:0004356|GO:0006807
Car14g01502 603 Pfam Glutamine synthetase, beta-Grasp domain 82 157 IPR008147 GO:0004356|GO:0006542|GO:0006807
Car14g01502 603 Pfam Glutamine synthetase, catalytic domain 228 405 IPR008146 GO:0004356|GO:0006807
Car14g01502 603 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 297 313 IPR027303 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01502 K01915 glnA, GLUL; glutamine synthetase [EC:6.3.1.2] - csv:101212441 833.172
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01245 Car14g01502 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00409 Car-Chr8:2647352 Car14g01502 Car-Chr14:12423618 8.81E-40 dispersed
Car14g01502 Car-Chr14:12423618 Car17g00945 Car-Chr17:7704406 6.57E-31 dispersed
Car14g01502 Car-Chr14:12423618 Car06g01245 Car-Chr6:8983312 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g412 . . Bda03g01264 . . . Bma04g01174 . . . . Cma14g01668 Car06g01245 Car14g01502 Sed02g1281 Cpe08g00232 Cpe03g01408 Bhi01g00873 Tan10g0907 Cmetu06g1518 . . . . . . . . . . . . . Cone7ag0205 Cone4ag0196 Lsi05g01467 . . Cme06g00659 . . . Bda13g00143 . . . . . Cmo06g01445 Cmo14g01714 . . . . . . . . . . . . . . . . . . . . . Csa03g01384 Chy06g00627 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000333 5 5 3 4 4 4 2 4 4 4 4 4 7 3 4 8 4 8 7 4 4 4 2 4 4 3 4 9 5 5 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01502 Car_Chr14 FPKM 259.667999 285.644104 259.566986 244.04715 367.53186 394.78952 355.867096 394.990051 387.841187 363.85141