Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01517 ATGGCGGATTCTGTTGTCCAATCGAGTCGATCGAGGGACCTCGATAAGCTCCTTCTTAGGCCCGGTAACCTCATCGGCGCCAATTTCGAGCCCGGTTCCCAATTGAGGGATGATCTTCAACAGTATGTGAAAGTTCTGGTCATAGGAGCTGGAGGGTTGGGCTGCGAGCTCCTGAAGGACTTGGCTTTGTCGGGTTTCCGGAATCTGGAAGTAATTGACATGGATCGCATTGAAGTTACTAATCTCAATCGTCAGTTTCTCTTCAGGCTTGATGATGTTGGTAAGCCAAAAGCTGAGGTAGCTGCAAAACGTGTTATGGAGAGAGTTAGTGGTGTCAATATTGTGTGGCATTTTTGTCGGATTGAGGACAAAGAAATTGAATTTTACAACGATTTTCACATAATTGCACTTGGTCTTGATTCCATTGAAGCTCGAAGTTACATCAATTCTGTCGCCTGTAGCTTCCTCGAGTACGATTCTGATGATAATCCGTTAGAAGAAACAATTAAACCAATGGTAGATGGTGGAACTGAAGGCTTCAAGGGGCATGCAAGGGTAATTTTACCAGGGGTCACGCCATGCTTCGAGTGTACCATCTGGCTTTTTCCACCTCAAGTGAAGTTCCCTTTATGTACTCTAGCAGAAACTCCTAGAACTGCCGCTCATTGTATCGAGTATGCTCACCTAATTAAATGGGATGAGGTTCATAGCGGCAAAGCTTTTGATCCGGATGATTCAGAACATATGAAATGGGTTTACAGTGAGGCTGTTAAGAGAGCCGAGCTTTTTGGCATACCCGGAGTTACATATTCACTAACTCAGGGTGTTGTGAAGAATATCATCCCTGCTATTGCTTCCACCAATGCTATTATATCAGCAGCATGTACACTGGAAACGTTGAAGATCGTATCGGGATGCAGCAAAACGCTATCCAACTACTTAACATATAATGGTGCAGAAGGTCTCCACACTAAAGTGACAGAGTTTGTAAAAGACAAGGACTGTCTTGTTTGTGGTCCAGGTGTTCTTATTGAGCTGGATTCTTCAATCTCTTTGCAAAAGGTCGGTTATTTAGCTTATGCAAACATATCGTTAATTTCAGATGTTGAGAAATCTTGTAAAATCCTTCATGACGTTACTCCCACTTTTTGTGTGAAACAGTTCATTGAACTTCTAGAGGATCATCCCAAGCTCTTGTTATCGAAGGCTAGTGTCACGCATCGAGGGAAGAATCTATACATGCAGGCACCTCCTGTACTTGAAGAGATGACCAGATCAAATTTGAGTGTTCCACTTTTTGACTTGATGGGTAAAGTTTTGAAAGATGTAGTCCATGTCACTGGTGTAGCTTCTAAGAACGATAAGAAAACTTCCTGTCTCCGAAAATTACGTGTGGCGTTTAAGGGGGTTGACGGTGTTACGGATATGGACACTGCAGGTGGGGCTTAA 1449 43.34 MADSVVQSSRSRDLDKLLLRPGNLIGANFEPGSQLRDDLQQYVKVLVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTNLNRQFLFRLDDVGKPKAEVAAKRVMERVSGVNIVWHFCRIEDKEIEFYNDFHIIALGLDSIEARSYINSVACSFLEYDSDDNPLEETIKPMVDGGTEGFKGHARVILPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKAFDPDDSEHMKWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACTLETLKIVSGCSKTLSNYLTYNGAEGLHTKVTEFVKDKDCLVCGPGVLIELDSSISLQKVGYLAYANISLISDVEKSCKILHDVTPTFCVKQFIELLEDHPKLLLSKASVTHRGKNLYMQAPPVLEEMTRSNLSVPLFDLMGKVLKDVVHVTGVASKNDKKTSCLRKLRVAFKGVDGVTDMDTAGGA 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12493069 12496234 + Carg23815-RA Car14g01517 161419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01517 482 Pfam ThiF family 33 336 IPR000594 -
Car14g01517 482 Pfam E2 binding domain 379 467 IPR014929 GO:0019781|GO:0045116
Car14g01517 482 ProSitePatterns Ubiquitin-activating enzyme active site. 209 217 IPR033127 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01517 K10686 UBA3, UBE1C; NEDD8-activating enzyme E1 [EC:6.2.1.64] - csv:101209336 847.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01517 Car-Chr14:12493069 Car20g00711 Car-Chr20:4104139 2.38E-08 dispersed
Car14g01517 Car-Chr14:12493069 Car02g00243 Car-Chr2:1646489 3.32E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g445 . . . . . Bpe14g01316 . . . . . Cma14g01683 . Car14g01517 Sed02g1264 . Cpe03g01420 Bhi01g00848 Tan10g0877 Cmetu06g2420 . Hepe05g1528 . Lcy11g1514 . . . . . . . Cone14ag0828 . . . Lsi05g01447 . . Cme06g00634 . . . . . . Bma02g00690 . . Cmo06g01432 Cmo14g01729 . . . . . . . . . . . . . Cla05g00570 Cam05g0626 Cec05g0637 Cco05g0632 Clacu05g0622 Cmu05g0590 Cre05g0659 . Csa03g01360 Chy06g00604 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008479 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 3 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01517 Car_Chr14 FPKM 18.224478 18.086796 23.585682 24.835062 11.448501 10.907701 11.756804 14.884117 14.158421 14.207109