Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01522 ATGGGGAAGAAGAAGCATAAGCGACCGGAATCGGAGTCGGAGGCACTTGACGGAGGCGATTTTGAAGCTCGGCATGAAACTGAGCTCATTAATGGATGCTCTCCTGAGACGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAAGCAGAATGTTGAGAATGAGGAAATCGAGGGGGAGAAGAGGAAACCGATTTCAAAACCTACAGTGAGCATGGCAGTATCCGGTTCCATCATTGACAACGCTCAATCCCTTGAGCTTGCCACCAGATTGGCTGGTCAAATCGCTCGAGCGGCAACCATATTCCGAATTGACGAGGTGGTGGTATTTGACAGTGGAAGGAGTTCAATGACTGGCTCGGATGTTGCAGCAGCTAACAATTCAGATGAGGATGAAAGTGGCGCTGCTTTTCTTATAAGGATCTTGAAGTATCTTGAGACTCCACAATACTTGAGAAAAGCTCTTTTCCCAAAGCACAACAATTTAAGATTTGTGGGGATGTTGCCCCCGCTTGATGCCCCTCACCATTTGCGCAAGCATGAATGGGGTCCCTATCGAGAAGGTGTTACTTTGAAAGAAAGAGCTCCAGATGCTAGAGGAACATTAGTTGATGTTGGTTTGAGTAAGAACGTGGTAGTTGATGAAATACTTGAACCCGGAAGAAGAGTAACAGTTGCTATGGGAACAGATCGCAATTTACTTGCTGATCTACCCCGCCAGGTTGTCTCATCCTCAAAGCCTGTGGAAGAAGAACTTTACTGGGGTTATAGAGTGCGATATGCTTCTTCTTTGAGTGCAGTTTTTAAGGAGAGTTCATACGAGGGTGGTTATGATCACTTGATTGGAACCTCAGAGCATGGAACAATAATTAAGTCCTCGGAACTAATACTACCTTCTTTCAGACATCTTTTAATTGCCTTTGGTGGACTTGCCGGTTTGGAGGAGAGCATTGAGGAAGATAACAACTTCAAGAGTAAAAATGCTTGTGAGATCTTTTCTTCATACTTGAATACATGTCCACTGCAAGGAAGCCGAACAATCCGAACAGAGGAAGCAATACTCATCTCTCTCCAGTATTTCCAAGAACCGATAAGCAGGGCATTGCAGATTTCAGCAGATTAG 1119 44.68 MGKKKHKRPESESEALDGGDFEARHETELINGCSPETKKKKKKKKRKKQNVENEEIEGEKRKPISKPTVSMAVSGSIIDNAQSLELATRLAGQIARAATIFRIDEVVVFDSGRSSMTGSDVAAANNSDEDESGAAFLIRILKYLETPQYLRKALFPKHNNLRFVGMLPPLDAPHHLRKHEWGPYREGVTLKERAPDARGTLVDVGLSKNVVVDEILEPGRRVTVAMGTDRNLLADLPRQVVSSSKPVEEELYWGYRVRYASSLSAVFKESSYEGGYDHLIGTSEHGTIIKSSELILPSFRHLLIAFGGLAGLEESIEEDNNFKSKNACEIFSSYLNTCPLQGSRTIRTEEAILISLQYFQEPISRALQISAD 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12515457 12519786 + Carg23810-RA Car14g01522 161424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01522 372 Coils Coil 34 59 - -
Car14g01522 372 MobiDBLite consensus disorder prediction 48 64 - -
Car14g01522 372 Pfam Putative RNA methyltransferase 68 358 IPR003750 -
Car14g01522 372 MobiDBLite consensus disorder prediction 1 36 - -
Car14g01522 372 MobiDBLite consensus disorder prediction 1 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01522 K09142 SPOUT1; methyltransferase [EC:2.1.1.-] - csv:101207949 651.744
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01228 Car14g01522 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01522 Car-Chr14:12515457 Car06g01228 Car-Chr6:8889283 9.28E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g459 . . . . . . . . . . Cma06g01425 Cma14g01689 Car06g01228 Car14g01522 Sed12g0906 . Cpe03g01423 Bhi01g00838 Tan10g0866 Cmetu06g1993 . Hepe05g1534 . Lcy11g1521 . . . . . . . . . . . Lsi05g01440 . . Cme06g00628 . Blo07g00211 Bda11g00567 . . Bpe13g00617 . Bma06g01546 . Cmo06g01428 Cmo14g01733 . . . . . . . . . . . . . Cla05g00564 Cam05g0620 Cec05g0630 Cco05g0625 Clacu05g0616 Cmu05g0584 Cre05g0652 . Csa03g01353 Chy06g00598 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011621 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01522 Car_Chr14 FPKM 10.549493 10.829707 12.748405 13.090675 8.282096 8.857918 9.412694 18.816355 17.812057 17.637691