Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01528 ATGTCTGACGATGGCAACTTTCAGCTGCTGAATTCCTCCTCCGATCCCATATGGCAGAGCTTCGATCATCCCACCGATACTCTATTGCCTGGACAGGGCCATCAACTGTTCTCAAATGTGAACGGAAAAACCGACTATTCCAAAGGCCGATTCATGTTGGATGTAGCAGACGACGGCAATGTCCTCTTGACTTCTTTTCGAAATGGTGATCCTGCTTATAAGTATTCCGGTACGTCCGGAAGCAGCAGCATCGTCTTCAACCGAACGACAGCTCTATTGTATGTCTTTAATGGCACAACAATTACATATACAATGACGACCGAACAGCCACCGCCAGTAGAAGACTATTACCACAGAGTAATCCTCGATGATCAGGGGAACTTCCGGCAGTTGTATCGGAGTAAGACTGGCAGCGAGTGGGAAACGGCATGGAAGTGGGTTGAAAGGCCTTGTTTGGTGAATAACATTTGTGGGGTGTTTGGATTTTGCACCTCACCTGACAATGAAACTGTGAATTGTTCGTGCTTGGAAGGGTATTCTTCGATTGATCCAAACACGCCCTCTAAAGGGTGCCAACCAGATCTGGTCATGGACTTTTGTTCATTAGATTCTACACATGAGAGCTTCAAAATTGTTAGGCTTGAAGATGCTGATTTCCCATATCTTAAGGACTCTGATGTTTCCATGGTTGGACCATTGGATGACAGCCAGTGCGAGGAAGCTGTGAGAAAAGACTGTTTTTGCTCGGCTGCCGTTTATTTTAATAATGGTTGCTACAAGAAGAGGATGCCATTGTTAAACGCTAGACGAAGCATTTCGGACACCAATAATCTTGTGGCGTTCCTGAAAGTTCCCATCAATAATGACGGAAAAACACTCATTTCTAACGAAGCTCTGCTAGCGATATTTGTGGTATGTTCAACATTTGCATTGCTTTTTGCAGTCGTTTCCGTCTATTATCAGCCCTTTCTTACAAGGGGTTTGTTTAAAGAAAAGAAACCTGCAAAGCTGAATCAGTTGGAGGTGAATTTGAAGGCATTTTCATTGAATGAATTGAAAGAAGCAACAAATGGATTCCAAAAGCAACTTGGGAGTGGAGCTTTTGGTACAGTCTATCATGGGGTTTTGAGGTTGAGAGATCAAGAAGTGGAGGTTGCAGTAAAGAAATTGAAGACGCTGACTGAACATGGAGAGAAGGTGTTCTTAACAGAAGTCCAAATAATTGAGACCATCTTTTGCAGAAGGCATGTTGTAAAAGAGATGGAAGCCTCTGATGCAACATTTCTGGTGGACTGGGTTGTAAGTTGTTTGAGAGCAGAAAGATTGAGAGACGTGATAAGCCATGATTCTGAAGCTGTGAATGACTACGAAAGGTTTAAGAGGATGGCAATGGTGGGTCTGTGGTGCTTGTCTTCGGATCCGCTTCCGGATCAGACCATTTCAGAAGCACGATTGTTCAGAAACTTCAATCCGTCCACCATGGCCAACATCCTCATGCTTCTTTCCTTTCTCCTTATGAACTTCCATGAGTGTTTGGCTCAAACTGGCTCCGCCATAAGCCCGGGTTCCTCCATTACTGCAGGATCTACCCATTCCTGGGTTTCTCCATTAGGGGACTTTGCTTTCGGTTTCTATCATCTTTCCAACTATCTCTACCTTGCCGGAATTTGGTTTGATAAAATCCCCGAAAAGATACTGGTTTGGTCGGCCAACCGTGACAATCCGGCGCCGCTGGATTCCGTCGTCCAGTTGAACAACACCGGCCATTTTGAAATTCTGTCCCCAACCGGCTCCATTATTCCATCAACATTTACAGAGCAGAAGACCCCTGCAAGTTCCGGCCAAATGCAAGACGATGGCAACTTGGTGTTGAAAAACGCCAATCCTGAGGCCGTCTGGCAAAGCTTCGATTGGCCGACAGACACGCTCCTTCCCGGACAGGTTTTGGGCGTCGACAAAAAAATGTTCTCTGCAAGAACCAGCTCAGATTTCTCAACTGGGAATTTCATGTTGCAAATGCAAAGCGATGGGAATCTGGTGCTATCCAATTACCTCTTCTCTAATATTGGGTATTGGTTCACAATCGCAACAGAGGTTCCAAACACTGTCTTGATGTTCGATAACTCTGCTTCAATGTTCCTTACCAATGGAACTTCCCCAATTGGACAGATATTTCGCAATTTGACAGTTAATGATCAAGCCCCAATTAAGGATTACTATCACAGAGCAACGATCGGTGTCCATGGCGATTTTCGACAATATATTCACCACAAGACAGACAGAAATGAATGGAAAAAGATTTGGGGAGCCATGAGCGATCCTTGCCTTGTGAACACAGTTTGCGGCTTAAATGGTCTCTGCATATCATCCGACAACGACACAGTAACCTGCGATTGCTTGCCGGGCTTTGTTCATTTGGATCCGACCGATGCTATGAAAGGATGTCGGCCAAAAACAGTGGACAATTACCGTAGTGAAGATTATGGGAAGACATTCGAGATCCAGGTGATCAATGATGTCGATATCGACTTCCCCCCTGGAGCAGGACAATTTTCAGTATTGGCTACTACAAACGACGTTGATGTTGAGGGATGCAAACAGGCAATCCTCGGGGATCGTTATGCCATGGCTGCAACTTTGAATGGCAGGACATGTCTTAGCAAAAGGACGCCATTAATGAATGCTAGAAATACTTCCAATACTAAAGGATTAAGAACTCTGATCAAAGTGCCTTCAGGAAACAGTCCGATGGGTTTAAACAACAAACCAAAAGACAAATCGAAATACCGAAAGTTCTTGGAGATCGGCAATATAATCGCTGGAGTTCTTGCTTTTTGCTTCGGAGTCGTTGCCCTCTTCTCTCATCCCATAACTGGAAGATTGTTGAGAAGGAAGCAACGTTCAAGTGCAAGTGCCATCGGAATCAATTTCCGGGAATTCACTTACCAGGAATTGGATGATGCAACCGATGGATTCCACAGGATCCTCGGCCGGGGATCTTCGGGTAAAGTGTTCAGCGGAGATTTACACATAGACGGTGTTGAGGTGGAAATTGCAGTGAAACTGCTCGATAAAATGCATGACAGAACTGAAAATGAGTTCGTGACGGAGCTCACAATCATCGGCCGGACGTATCACAAGAATTTGGTCCGATTGTTAGGTTACTGCATCGAAAAGGAGAATCAATTTCTTCTAGTGTATGAGCTAATGCCGAGGGGAGCACTATCAGGTTTCCTATTTGGCAGTGGCGAAAACCCTAATTGGGCACAGAGGGTCGAAATTGCGTTGGGAATAGCGAGAGGATTAGCGTACTTACACGAAGGGTGCGAGACGCAGATCATCCATTGCGACGTGAAGCCCCAAAACGTACTCCTCGACGCCAATTACACAACGAAAATCGCAGATTTTGGGATATCGAAGCTGTTGATGAAGGACCAAACGAGAACAAACACGGAGGCGAGAGGGACATTTGGGTACATGGCGCCGGAGTGGCTGAGGGGAGCTCCGGTGACGGCAAAGGTGGATGTATTCAGCTATGGGGTAATGCTGTTGGAGATAATTTGCCGTAGAAGGAACGTTGAGTTGGATCGAGTGGAAGAAGAAAGTGAGGAGGAGGACTTGGTTTTATCGAATTGGGTTCTGAGTTGCGCGGCGGCCGGTAAACTGGAGACGGTGGTGGGAGATGAGCCGGAAACATTAAGGGATTTGGACAGGTTTGAAAGGATGGCAATGGTGGGGTTATGGTGCATTCATCCAGATGCGTCTCAAAGACCATCCATGAAGAAGGTGACCCAAATGTTAGAAGGCACGGACGATGTTGGAACCCCTCCTCAGCTCCTGCGCGCCACAACCTCCTCCTCAGCTGCTCTACTTCTGTCGACCGGCTCCATCCCTTTAAGTGAATAA 3906 46.03 MSDDGNFQLLNSSSDPIWQSFDHPTDTLLPGQGHQLFSNVNGKTDYSKGRFMLDVADDGNVLLTSFRNGDPAYKYSGTSGSSSIVFNRTTALLYVFNGTTITYTMTTEQPPPVEDYYHRVILDDQGNFRQLYRSKTGSEWETAWKWVERPCLVNNICGVFGFCTSPDNETVNCSCLEGYSSIDPNTPSKGCQPDLVMDFCSLDSTHESFKIVRLEDADFPYLKDSDVSMVGPLDDSQCEEAVRKDCFCSAAVYFNNGCYKKRMPLLNARRSISDTNNLVAFLKVPINNDGKTLISNEALLAIFVVCSTFALLFAVVSVYYQPFLTRGLFKEKKPAKLNQLEVNLKAFSLNELKEATNGFQKQLGSGAFGTVYHGVLRLRDQEVEVAVKKLKTLTEHGEKVFLTEVQIIETIFCRRHVVKEMEASDATFLVDWVVSCLRAERLRDVISHDSEAVNDYERFKRMAMVGLWCLSSDPLPDQTISEARLFRNFNPSTMANILMLLSFLLMNFHECLAQTGSAISPGSSITAGSTHSWVSPLGDFAFGFYHLSNYLYLAGIWFDKIPEKILVWSANRDNPAPLDSVVQLNNTGHFEILSPTGSIIPSTFTEQKTPASSGQMQDDGNLVLKNANPEAVWQSFDWPTDTLLPGQVLGVDKKMFSARTSSDFSTGNFMLQMQSDGNLVLSNYLFSNIGYWFTIATEVPNTVLMFDNSASMFLTNGTSPIGQIFRNLTVNDQAPIKDYYHRATIGVHGDFRQYIHHKTDRNEWKKIWGAMSDPCLVNTVCGLNGLCISSDNDTVTCDCLPGFVHLDPTDAMKGCRPKTVDNYRSEDYGKTFEIQVINDVDIDFPPGAGQFSVLATTNDVDVEGCKQAILGDRYAMAATLNGRTCLSKRTPLMNARNTSNTKGLRTLIKVPSGNSPMGLNNKPKDKSKYRKFLEIGNIIAGVLAFCFGVVALFSHPITGRLLRRKQRSSASAIGINFREFTYQELDDATDGFHRILGRGSSGKVFSGDLHIDGVEVEIAVKLLDKMHDRTENEFVTELTIIGRTYHKNLVRLLGYCIEKENQFLLVYELMPRGALSGFLFGSGENPNWAQRVEIALGIARGLAYLHEGCETQIIHCDVKPQNVLLDANYTTKIADFGISKLLMKDQTRTNTEARGTFGYMAPEWLRGAPVTAKVDVFSYGVMLLEIICRRRNVELDRVEEESEEEDLVLSNWVLSCAAAGKLETVVGDEPETLRDLDRFERMAMVGLWCIHPDASQRPSMKKVTQMLEGTDDVGTPPQLLRATTSSSAALLLSTGSIPLSE 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12556838 12563129 - Carg23804-RA Car14g01528 161430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01528 1301 ProSiteProfiles Bulb-type lectin domain profile. 516 637 IPR001480 -
Car14g01528 1301 ProSiteProfiles Protein kinase domain profile. 990 1279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car14g01528 1301 ProSitePatterns Protein kinases ATP-binding region signature. 363 389 IPR017441 GO:0005524
Car14g01528 1301 Pfam S-locus glycoprotein domain 738 804 IPR000858 GO:0048544
Car14g01528 1301 Pfam S-locus glycoprotein domain 114 180 IPR000858 GO:0048544
Car14g01528 1301 Pfam Protein tyrosine and serine/threonine kinase 359 446 IPR001245 GO:0004672|GO:0006468
Car14g01528 1301 Pfam Protein tyrosine and serine/threonine kinase 993 1266 IPR001245 GO:0004672|GO:0006468
Car14g01528 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1113 1125 IPR008271 GO:0004672|GO:0006468
Car14g01528 1301 ProSitePatterns Protein kinases ATP-binding region signature. 996 1021 IPR017441 GO:0005524
Car14g01528 1301 ProSiteProfiles EGF-like domain profile. 771 809 IPR000742 -
Car14g01528 1301 Pfam D-mannose binding lectin 566 655 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01528 - - - bhj:120084699 1125.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g01059 Car-Chr12:10379176 Car14g01528 Car-Chr14:12556838 1.33E-81 dispersed
Car14g01528 Car-Chr14:12556838 Car20g00050 Car-Chr20:287335 8.04E-10 dispersed
Car14g01528 Car-Chr14:12556838 Car14g01535 Car-Chr14:12675461 2.81E-17 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g481 . . . . . . . . . . . Cma14g01697 . Car14g01528 . . . Bhi01g00821 . . . . . Lcy11g1537 . . . . . . . . . . . Lsi05g01426 . . . . . . . . . . . . . Cmo14g01742 . . . . . . . . . . . . . Cla05g00552 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001427 0 3 0 0 0 4 2 3 3 1 2 4 2 1 5 1 4 1 1 4 0 4 3 2 7 6 3 2 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89349 PF07714 PK_Tyr_Ser-Thr 9.80E-45 CL0016 Car PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01528 Car_Chr14 FPKM 36.14613 36.12904 35.453423 36.413239 27.30143 25.595392 27.730705 41.554737 36.686256 42.820343