Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01544 ATGCCATTTCTCTCGCCGAATTCGCTTGCTTCACTGGTCGAACTGGCCTTATCTATTCGTTCTTCTCTTCTCGGCCGAGTCGCCCATGCCCAGATTCTCAAAACCCTAAAAACCCCTTTTCCAGCCTTCCTCTACAACCATCTCGTGAACATGTACGCCAAACTTGACCAGCTTAACTCGGCCGAACTCATCCTCGAACTTGCCCCTTGCCGCTCCGTCGTCACTTGGACCTCTCTCATCGCCGGCTCCGTCCAAAACGGCCGTTTTGTTTCCGCTCTGTTTCACTTCTCCGACATGCTTAGTGACTGTGTTCGACCCAATGACTTCACCTTCCCTTGCGTTTTCAAAGCCTCCACTGGCCTTCGCATGGCCATGACAGGAAAACAGGTACATGCACTTGCGGTTAAGGAGGGATTAATAAATGATGTATTCGTCGGGTGCAGTGCCTTCGATATGTACAGCAAATTGGGCCTTCTTGATGACGCATACAAGCTGTTTGTTGAAATGCCTCATCGAAACCTCGAGACGTGGAACGCGTATATATCCAATTCAGTGCTCCATGGGCGACCTGAAGACTCTGCCATTGCGTTTATTGAGTTACTACGAGCTGGTGGGAAGCCAGATTCCATAACGTTTTGTGCTTTTCTCAATGCGTGTTCAGACAAACTAGGCTTGGAGCCTGGGTGTCAACTACATGGGTTCATTATTCGAAGTGGGTGTGGGCAGAATGTCTCTATTTCAAATGGATTGATTGATTTTTATGGGAAATGTGGGGAGGTTGTATGTTCTGAGGTGATCTTTGACAGAATGGGAGAGCGGAACAGCGTATCTTGGTCCTCCTTGATAGCTGCTTACGTTCAAAACAACGAGGAAGAGAAGGCTTGCTGCTTATTCTTGCGAGCGAGGAAAGAAGATATCAAACCAACTGATTTTATGGTATCGAGTGTGCTTTGTGCTTCTGCTGGACTTTCAGAAATCGAGTTGGGAAGGTCAGTTCAAGCACTGGCCGTCAAGGCTTGTGTAGAGGAGAACATCTTTGTTGGAAGTGCACTGGTTGACATGTATGGAAAATGTGGAAGTATTGACAAAGCAGAGCAAGCCTTCAATGAGATGCCAGAGAGAAACTTGGTGTCTTGGAATGCATTATTGGGCGGATACGCGCATCAAGGATATGCAGACAAGGCTGTGGCATTGCTCGAGGAGATGGCATCGGCCGAAGGCATAGCACCGAACTACGTAAGTTTGGTCTGTGCATTATCAGCTTGCAGTAGAGCAGGAGATTTGAAGACGGGGATGCAGATTTTTGAGTCCATGAAAGCAAGATACGGTATAGAACCAGGGCCGGAGCATTATGCTTGCTTGGTAGATCTATGTGGGCGTGCTGGAATGGTGGAATGTGCGTATGATTTTATAAGGCGCATGCCATTTCCTCCCACAATCTCAATCTGGGGTGCTCTGTTGGGGGCTTGTCGAATGCATGGGAAGCCAGAGTTGGGAAAGTTGGCCGCTGAGAAGCTGTTTGAACTTGATCCAAAAGACTCCGGAAACCACGTTGTGCTGTCCAATATGCTTGCTGCAACTAGCAGGTGGGAAGAAGTGACGGTCATACGTAATGAGATGAAAGAAGTAGGGATCAAAAAGGGAGCTGGATTCAGCTGGATAACAGTAAACAGCAGAATTCGTATATTCCAAGCGAAAGACAAAAGCTATGAGAAGGACTATGAAATTCAGGATATGCTGGGGAAACTGAGGAAGGAGATGCAGGAAGCTGCTGGTAGCATTGCAGACGCCAATTATGCTCTTTTTGAAGCGTAG 1815 47.66 MPFLSPNSLASLVELALSIRSSLLGRVAHAQILKTLKTPFPAFLYNHLVNMYAKLDQLNSAELILELAPCRSVVTWTSLIAGSVQNGRFVSALFHFSDMLSDCVRPNDFTFPCVFKASTGLRMAMTGKQVHALAVKEGLINDVFVGCSAFDMYSKLGLLDDAYKLFVEMPHRNLETWNAYISNSVLHGRPEDSAIAFIELLRAGGKPDSITFCAFLNACSDKLGLEPGCQLHGFIIRSGCGQNVSISNGLIDFYGKCGEVVCSEVIFDRMGERNSVSWSSLIAAYVQNNEEEKACCLFLRARKEDIKPTDFMVSSVLCASAGLSEIELGRSVQALAVKACVEENIFVGSALVDMYGKCGSIDKAEQAFNEMPERNLVSWNALLGGYAHQGYADKAVALLEEMASAEGIAPNYVSLVCALSACSRAGDLKTGMQIFESMKARYGIEPGPEHYACLVDLCGRAGMVECAYDFIRRMPFPPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDSGNHVVLSNMLAATSRWEEVTVIRNEMKEVGIKKGAGFSWITVNSRIRIFQAKDKSYEKDYEIQDMLGKLRKEMQEAAGSIADANYALFEA 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12708248 12710411 - Carg23519-RA Car14g01544 161446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01544 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 410 IPR002885 -
Car14g01544 604 Pfam E motif 495 554 IPR046848 -
Car14g01544 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 72 106 IPR002885 -
Car14g01544 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Car14g01544 604 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 374 IPR002885 -
Car14g01544 604 Pfam PPR repeat 377 403 IPR002885 -
Car14g01544 604 Pfam PPR repeat 151 173 IPR002885 -
Car14g01544 604 Pfam PPR repeat 74 102 IPR002885 -
Car14g01544 604 Pfam PPR repeat 451 474 IPR002885 -
Car14g01544 604 Pfam PPR repeat 276 305 IPR002885 -
Car14g01544 604 Pfam PPR repeat 248 274 IPR002885 -
Car14g01544 604 Pfam PPR repeat 419 440 IPR002885 -
Car14g01544 604 Pfam PPR repeat 349 375 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01544 - - - csv:101221353 1103.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01544 Car-Chr14:12708248 Car10g01045 Car-Chr10:10698044 1.95E-130 dispersed
Car04g01378 Car-Chr4:7980772 Car14g01544 Car-Chr14:12708248 1.14E-36 transposed
Car14g01544 Car-Chr14:12708248 Car06g01214 Car-Chr6:8824304 1.05E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g511 . . . . . Bpe14g01189 . . . . . Cma14g01709 . Car14g01544 . . . Bhi01g00809 . . . . . Lcy11g1547 . . . . . . . . Cone10ag0051 . . . . . Cme06g00608 Blo02g00537 . . Bda13g00119 . . Bma02g00845 . . . Cmo14g01753 . . . . . . . . . . . . . . . . . . . . . Csa03g01327 Chy06g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010596 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01544 Car_Chr14 FPKM 11.348148 11.437799 14.012956 14.552675 10.559598 9.496775 12.871398 25.48278 24.741417 26.336912