Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01554 ATGGAACACACAAAGATGGTGATGACTCTAGTTGCGGTTATTGTTGCCGTGCACTGGGCAGGAGCAGCCGCACAGTCGGACTGTACAAATGTGCTGATCAGCTTGTCTCCATGCTTGAATTACATTACAGGGAATTCCTCTACCCCATCACAAGCATGCTGCACACAGCTTGCCAGTGTTGTCCGTTCACAACCACAATGCTTGTGCCAGGTCCTGAATGGTGGTGGCTCGTCGCTTGGGATCAATATCAACCAAACCCAGGCCCTGGCTCTTCCCCGAGTTTGCAATGTTCAGACTCCTTCCATCAGCAGCTGCAATGTTGCTACTCCCACCGGCTCTCCAGCAGGAGCACCAGAATCTTCAAACAACGTTCCTTCAGGACCTGGATCAAAGACTGTTCCATCAACAGACAATGACTCATCAGACGGAACCTCGAACACTTTGTCAAAACCTCTACTATTCTCCATCTTGTTGGCTTCTGCATATGCTTCAGCTTTCAAGTTGTACTGA 510 49.41 MEHTKMVMTLVAVIVAVHWAGAAAQSDCTNVLISLSPCLNYITGNSSTPSQACCTQLASVVRSQPQCLCQVLNGGGSSLGININQTQALALPRVCNVQTPSISSCNVATPTGSPAGAPESSNNVPSGPGSKTVPSTDNDSSDGTSNTLSKPLLFSILLASAYASAFKLY 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12745765 12746485 - Carg23509-RA Car14g01554 161456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01554 169 Pfam Probable lipid transfer 15 105 IPR016140 -
Car14g01554 169 MobiDBLite consensus disorder prediction 108 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01554 - - - csv:101204822 275.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01000 Car-Chr2:7057238 Car14g01554 Car-Chr14:12745765 1.23E-10 dispersed
Car10g00873 Car-Chr10:5232710 Car14g01554 Car-Chr14:12745765 1.28E-14 dispersed
Car11g01197 Car-Chr11:9711940 Car14g01554 Car-Chr14:12745765 4.93E-16 dispersed
Car14g00709 Car-Chr14:3949943 Car14g01554 Car-Chr14:12745765 1.42E-10 dispersed
Car14g01554 Car-Chr14:12745765 Car19g00215 Car-Chr19:2101645 6.25E-19 dispersed
Car14g01554 Car-Chr14:12745765 Car14g01555 Car-Chr14:12747606 1.63E-06 tandem
Car13g00818 Car-Chr13:8927502 Car14g01554 Car-Chr14:12745765 8.89E-08 transposed
Car16g01002 Car-Chr16:8462252 Car14g01554 Car-Chr14:12745765 1.11E-07 transposed
Car14g01554 Car-Chr14:12745765 Car17g00200 Car-Chr17:1192558 1.83E-10 wgd
Car14g01554 Car-Chr14:12745765 Car02g01540 Car-Chr2:9939572 2.24E-23 wgd
Car14g01554 Car-Chr14:12745765 Car06g01204 Car-Chr6:8791629 4.27E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g528 . . . . . Bpe14g01197 . . . . . Cma14g01723 . Car14g01554 . Cpe08g00270 Cpe03g01446 . . . . . . . Cla06g00595 Cam06g0634 Cec06g0637 Cco06g0640 Clacu06g0620 Cmu06g0613 Cre06g1381 Cone14ag0860 Cone15ag0858 . . Lsi05g01618 . . . . . . . . . . . . Cmo06g01400 Cmo14g01762 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01554 Car_Chr14 FPKM 6.613602 8.084716 14.588063 15.069548 15.332493 13.708221 17.353626 8.081358 10.017898 9.586704