Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01597 ATGGCGACGGCGACGGCGACGGTGAAAGTAGAGACTGAGAAGTTGATGGGTTGCTTGACATGCCCTCTTTGCAACAACTTGTTCACTGATGCTACCACCATATCTGAATGCCTGCACACATTTTGCAGGGATTGTATCTATGAGAAGATAACCGAGGAGGAGTTGGAGGGTTGTCCTGTGTGCAACACAAATCTAGGGGGTGTGCCTTTGGAGAAACTCAGGGCAGACCACACAATGGATGATCTGAGGGAAAAGACATTCCCTTGCCAACGAAGGAAGGAGAAGGCACCTGAAACAACACAGTCTGCTGTTTCATTGCCGACCAAAAGAAAAGAGAGATCACTCTCTTCCTTAGACATCGACAACACAAATATGATTTCTCACTCTGCAGCGAAAATCCCGAAAGCTACAGCACAAGAGAACCTCGTCGTGCAACAGTGTCTTTCCAACATGATTCCCCAAAGAAAACTCATCTTTGTTCAAAATAAGCGGAACAATACCCAAGTAATGGAAAGGGAAACTGATGATTTTAATCGAAAAGAAGAAGCAACTGCAACAAGTTCAAATGATTGTAATATACAAGATACTGTTGTCAAGCCAGAGCCAATCCAGATTGATGATAATTATTGCAAGGTTCAAGAGCATAGTCACAAGCCAATAATGGAAAGAGTTGAAAGAGGACTATCTTTTGGAACTTCGGGTTCCATTGAACATGGAAACTTGCAGGATGTTTCGTGGGAAAGAAGATTATCCAGCAGCACTGGATCCTATGATCAGACTGTAGGTGACATTGGTGTAGAGAAACGATGCAATACGTTCTCAAATCCAATATGGTTTGCGCTAGTTGCTTCTGATCACCAGGAAGGAAATCAGCCTTTGCCTCAGATCTCCTCAAACTACTTGAGGGTCAGCGATGGCTGTATACCCGTGTCATTTATCCAGAAATATCTTGCGAAGAAACTGGGACTTGCTAGTGAGATTGAGGTGGAAATCTCATTTAAGGGCCATCCAGTGAGCTCCACATTGCATCTGCACGACCTCGTAGAACTGTGGCGACAGACAACCACAAAAATAGAACTAATACAGATATCTGTGGGCAGCTCAGCCAAAGATTTTGTGATGGTTCTATCTTATGGTCGAAAGAGTTGTCACTCTGGACAATTCCCAAATATTTGTGCCCACCTAGAGAATGATGTTCAACAAGAGATCAAATAG 1215 43.62 MATATATVKVETEKLMGCLTCPLCNNLFTDATTISECLHTFCRDCIYEKITEEELEGCPVCNTNLGGVPLEKLRADHTMDDLREKTFPCQRRKEKAPETTQSAVSLPTKRKERSLSSLDIDNTNMISHSAAKIPKATAQENLVVQQCLSNMIPQRKLIFVQNKRNNTQVMERETDDFNRKEEATATSSNDCNIQDTVVKPEPIQIDDNYCKVQEHSHKPIMERVERGLSFGTSGSIEHGNLQDVSWERRLSSSTGSYDQTVGDIGVEKRCNTFSNPIWFALVASDHQEGNQPLPQISSNYLRVSDGCIPVSFIQKYLAKKLGLASEIEVEISFKGHPVSSTLHLHDLVELWRQTTTKIELIQISVGSSAKDFVMVLSYGRKSCHSGQFPNICAHLENDVQQEIK 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12941550 12943535 + Carg16590-RA Car14g01597 161499

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01597 404 ProSiteProfiles Zinc finger RING-type profile. 21 62 IPR001841 -
Car14g01597 404 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Car14g01597 404 Pfam Zinc finger, C3HC4 type (RING finger) 21 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01597 K16277 DRIP; E3 ubiquitin-protein ligase DRIP [EC:2.3.2.27] - csv:101216620 560.836
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01597 Car-Chr14:12941550 Car17g01294 Car-Chr17:9770020 5.88E-11 dispersed
Car12g01097 Car-Chr12:10697972 Car14g01597 Car-Chr14:12941550 4.91E-77 wgd
Car14g01597 Car-Chr14:12941550 Car02g01520 Car-Chr2:9801049 3.02E-36 wgd
Car14g01597 Car-Chr14:12941550 Car05g01136 Car-Chr5:10848743 2.79E-84 wgd
Car14g01597 Car-Chr14:12941550 Car06g01164 Car-Chr6:8572666 4.81E-20 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g608 . . . . . . . . . . . Cma14g01775 . Car14g01597 . . Cpe03g01486 . . . . . . . . . . . . . . . . . . Lsi05g01665 . . Cme06g00546 . . . . . . . . . . Cmo14g01812 . . . . . . . . . . . . . Cla05g00488 Cam05g0533 Cec05g0545 Cco05g0545 Clacu05g0531 Cmu05g0503 Cre05g0571 . Csa03g01264 Chy06g00518 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014069 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01597 Car_Chr14 FPKM 15.137359 15.110256 14.875717 13.587797 13.144506 11.850557 14.41112 16.995878 13.504731 17.118351