Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01599 ATGGCTCTAATACACAGTCGTTTATGCCAAGCCACGAACTTCTTGGATACATTTCAAACTTCCTTCCCTGAATTCCATGGCTCTCGCGTTTTCCTGAAGTACGGTTCGTCGATTGTCTTCACAAAGCGCTCTTTCTGCTCTCCGTTTTATGCGTTTACGACGGATAAATGTTCCAATCGAATTCCGTATGGGAGTTTAAGCACGCAAACACCCATTTCCAGATATGATTTGAGGAGGAATTTCTGTCGTGCTAATTGGATAGATAGGTGGAACGAAACCGCGAAACAAAATCGTCCAAAACCACCTCGCGCCGTGTTGGACTATCCCAGTAGCGATGACAATGAAGTTTCGATTTCACGTTCAGATTTTTCGAAGAGTTATAGAGGTGGTAGTAGTAGGATTGATGATGATGGAAGAGGGGGAAGTACAATGGAGAAGATTGTGAGAAAATTGAAGAAATTTGGGTACATGGACGATGAGAATAAAGAGAAGGGGCAAGAGAGAGCCGCCATTGAAAAGGGGTCCGTGGAGGACATATTCCATGTTGAGGAAGGAATGTTGCCTAATACTCGAGGTGGGTCTTCTAAGGAATCTCCATTGGGAGTTGAGGGCATGTTTGGAAGTAATGGAGAGGTTAGATTTCCATGGGAGAAGCCAAAAGAAAGGGAATATGCAGATGGGGTTTCAACGAGGAGAAGGAGCATGGCATCTTTGGCAGAATTGACTCTTCCTGAGTCAGAATTGAGAAGGCTGAGGAACTTGACATTCATGAAAAAGCACAAGATGAAGATAGGCGGTGGAGGAGTGACTCAAGCTGTTGTGGATATCATTCATGAAAAATGGAAATCTTCTGAGATTGTGAGGCTTAAAATTGAAGGTCCTCCTGCGCTTAACATGAAAAGGATGCACGAGATATTGGAGAGAAAAACTGGTGGACTGGTTATTTGGAGGTCGGGAACTTCATTGTCTCTATATAGAGGTGTAAGCTATGAGCTTCCTGAAGCACCACAATTTAACAAATGGATTTACAAGAGAAATGAGATCACTCCTTTTCCTGAAACGGATGTCAGTACAATAGTTCCTTCCGAATCTTCTTCTCACAGTAATGTACACGAGCCACGAGAAAAAGGAGCAGAAACTTCGACAGAGGGTGAACAGGGCAGCGAACAATTGACAGAAGTACAAGTGAATTATGAGGATGAAGTAGACAAATTACTGGATGGTTTGGGTCCAAGATACACAGACTGGCCAGGATTGGATCCTTTACCGGTCGATGCAGATATGCTCCCGGGAGTAGTTTCTGATTACAAACCTCCATTTAGAATTCTTCCCTATGGAGTGAGATCTTCTCTTGGAGTGAAGGAGGCTACAGCCTTGAGAAGACTTGCCAGAAGACTTCCTCCTCATTTTGCACTAGGCCGAAACAGGCAGCTTCAAGGTTTGGCCATCGCAATGGCTAAATTGTGGGAACGAAGTTCAATTGCGAAAATTGCACTGAAACGAGGTGTGCAGCTAACTACTAGTGAGAGAATGGCTGAAGAGATCAAGAAATTGACAGGAGGCATGCTTCTGTCAAGAAACAAAGATTTTCTGGTATTCTATAGGGGAAAGAATTTCTTGTCACCTGAGGTCACTGAAGCTTTGTTAGAAAGGGAGAGGTTGGCGAAGTCTCTACAAGATGAAGAAGAACAGGCAAGGTTGAAAGCATCAGCCCTGGTGGTTCCTGGCATTGAGAAAACAGAGCAATCTGGCACTGCTGGTTCTCTAGAGGAAACACTAGATGCTGATGCTAAATGGGGAAAGCAGCTGGACGACCAGCACAAGGAAAAAGTAATGCGGGACGCCGAACGATTGAGACACACCGACCTTGTTAGGAAGCTGGAACGGAAGCTTGCTATTGCTGAAAGAAAGTTGGTGAAAGCTGAACGAGCGTTATCTAAGGTCGAAGCGTTTATGACACCAGCTCAGCGGCAGGCAGAACCTGATAGCATAACTGAGGAGGAAAGGTTTATGTTTCGTAAGCTTGGTCTACGAATGAAAGCTTTCTTGCTTCTAGGTCGTCGTGAAGTTTTCGATGGTACGGTGGAGAACATGCACTTGCATTGGAAGTATCGTGAATTGGTGAAGATCATGATAAAAGCTAATTCCTTTGACCATGTCAAAAAGATAGCTTTGCAACTGGAAGCTGAGAGTGGGGGTGTCCTAGTTTCTATTGACAAAGTCTCCAAATCGTATGCGATAATCGTTTATCGAGGGAAGGATTATCAACGACCTTCTTTGCTGAGACCCAAGAATCTTTTGACAAAGAGGAAGGCTCTAGCACGGTCGATCGAGCTTCAAAGGCACAAGGCTTTGCTGAGACATATATCAGCAGTGCAGAGTAGCGTGGACAAACTAAGATCCGAAATCGAACAAATGGAGACGGTGAAAGACAGAGGGGATGAAGTATTATACAACACACTGGACTCTGCTTATCCTACCGACAATGATACGGAGGAAGAAGACTTCGATACATATATGGAGGCATATGAATCGGATGGTGATGCTGAAGATGAAGAGAATATCATGGCTGCCCACGATTACTTGGAAGGAGATTTTCCACATGGAATCCAGGTACAAGAATCTGAGGTTGAATAG 2637 44.33 MALIHSRLCQATNFLDTFQTSFPEFHGSRVFLKYGSSIVFTKRSFCSPFYAFTTDKCSNRIPYGSLSTQTPISRYDLRRNFCRANWIDRWNETAKQNRPKPPRAVLDYPSSDDNEVSISRSDFSKSYRGGSSRIDDDGRGGSTMEKIVRKLKKFGYMDDENKEKGQERAAIEKGSVEDIFHVEEGMLPNTRGGSSKESPLGVEGMFGSNGEVRFPWEKPKEREYADGVSTRRRSMASLAELTLPESELRRLRNLTFMKKHKMKIGGGGVTQAVVDIIHEKWKSSEIVRLKIEGPPALNMKRMHEILERKTGGLVIWRSGTSLSLYRGVSYELPEAPQFNKWIYKRNEITPFPETDVSTIVPSESSSHSNVHEPREKGAETSTEGEQGSEQLTEVQVNYEDEVDKLLDGLGPRYTDWPGLDPLPVDADMLPGVVSDYKPPFRILPYGVRSSLGVKEATALRRLARRLPPHFALGRNRQLQGLAIAMAKLWERSSIAKIALKRGVQLTTSERMAEEIKKLTGGMLLSRNKDFLVFYRGKNFLSPEVTEALLERERLAKSLQDEEEQARLKASALVVPGIEKTEQSGTAGSLEETLDADAKWGKQLDDQHKEKVMRDAERLRHTDLVRKLERKLAIAERKLVKAERALSKVEAFMTPAQRQAEPDSITEEERFMFRKLGLRMKAFLLLGRREVFDGTVENMHLHWKYRELVKIMIKANSFDHVKKIALQLEAESGGVLVSIDKVSKSYAIIVYRGKDYQRPSLLRPKNLLTKRKALARSIELQRHKALLRHISAVQSSVDKLRSEIEQMETVKDRGDEVLYNTLDSAYPTDNDTEEEDFDTYMEAYESDGDAEDEENIMAAHDYLEGDFPHGIQVQESEVE 878
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 12948266 12952392 + Carg16588-RA Car14g01599 161501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01599 878 Coils Coil 789 809 - -
Car14g01599 878 ProSiteProfiles CRM domain profile. 241 337 IPR001890 GO:0003723
Car14g01599 878 ProSiteProfiles CRM domain profile. 449 546 IPR001890 GO:0003723
Car14g01599 878 Coils Coil 617 644 - -
Car14g01599 878 Coils Coil 544 564 - -
Car14g01599 878 MobiDBLite consensus disorder prediction 112 128 - -
Car14g01599 878 ProSiteProfiles CRM domain profile. 662 762 IPR001890 GO:0003723
Car14g01599 878 MobiDBLite consensus disorder prediction 95 142 - -
Car14g01599 878 Pfam CRS1 / YhbY (CRM) domain 243 326 IPR001890 GO:0003723
Car14g01599 878 Pfam CRS1 / YhbY (CRM) domain 665 751 IPR001890 GO:0003723
Car14g01599 878 Pfam CRS1 / YhbY (CRM) domain 454 535 IPR001890 GO:0003723
Car14g01599 878 MobiDBLite consensus disorder prediction 354 391 - -
Car14g01599 878 MobiDBLite consensus disorder prediction 368 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01599 - - - bhj:120069423 1476.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00654 Car-Chr10:3349851 Car14g01599 Car-Chr14:12948266 0 dispersed
Car11g00248 Car-Chr11:1384503 Car14g01599 Car-Chr14:12948266 0 dispersed
Car14g00571 Car-Chr14:3101736 Car14g01599 Car-Chr14:12948266 2.67E-155 dispersed
Car14g01599 Car-Chr14:12948266 Car15g00054 Car-Chr15:388020 3.02E-134 dispersed
Car14g01802 Car-Chr14:14102283 Car14g01599 Car-Chr14:12948266 2.32E-09 dispersed
Car14g01599 Car-Chr14:12948266 Car10g00218 Car-Chr10:1048000 2.78E-173 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g611 . . . . . . . . . . . Cma14g01778 . Car14g01599 . . Cpe03g01487 . . . . . . . . . . . . . . . . . Cone4ag0294 Lsi05g01670 . . Cme06g00543 . . . . . . . . . . Cmo14g01815 . . . . . . . . . . . . . Cla05g00486 Cam05g0529 Cec05g0542 Cco05g0542 Clacu05g0528 Cmu05g0500 Cre05g0567 . Csa03g01261 Chy06g00516 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011586 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01599 Car_Chr14 FPKM 2.603796 3.331894 1.160384 0.900875 3.555292 3.406661 3.545716 0.0 0.0 0.0