Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01611 ATGGAGAGGAACTGTCTACGCACTGCCTGTCGTACGAGTTTAACAACAATGAACACCACCATCAGCGGCGGAGGAGCACCAGCAGCAGCAGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAACAGCCAACGCGGCAGTGAAAAGCCAGAGAAACAAGGTGTGCAGGGCAGCGGCGGCGGCAGAGGAGGATTTCATAAATGGGATTTCATGGCCACCAAGAAGTTACACGTGCAACTTCTGCAAAAGGGAATTCAGATCGGCTCAAGCACTTGGCGGCCACATGAATGTCCACCGGAGAGATAGAGCCTTACTCTACTCTCCCCCTGCTGATCATACCCACTTCACAAATCTCAACCTTAACCTTCACCATAACCCTTTCCCTAATCGCCCCTTCAAAGCCTTGGAGATTGCCAAACCTAATAGGAACAAGCCCCACAAATTCATTGGTTTGGACATTGAAATCAACACTACCAATAACACTGCCACCCTACTTACTGAATCCAAGAAAAAGGACATTGATTTGGAGCTTCGATTAGGGTACTCAACTTAG 561 50.09 MERNCLRTACRTSLTTMNTTISGGGAPAAAAAAGGGGGGGGGGGTANAAVKSQRNKVCRAAAAAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADHTHFTNLNLNLHHNPFPNRPFKALEIAKPNRNKPHKFIGLDIEINTTNNTATLLTESKKKDIDLELRLGYST 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13002826 13003386 + Carg16576-RA Car14g01611 161513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01611 186 MobiDBLite consensus disorder prediction 26 48 - -
Car14g01611 186 Pfam C2H2-type zinc finger 79 103 - -
Car14g01611 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Car14g01611 186 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01611 - - - csv:101215415 189.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00974 Car-Chr8:6475068 Car14g01611 Car-Chr14:13002826 6.36E-19 dispersed
Car14g01611 Car-Chr14:13002826 Car19g00199 Car-Chr19:1876133 1.33E-18 dispersed
Car14g01611 Car-Chr14:13002826 Car19g00056 Car-Chr19:492090 1.21E-18 wgd
Car14g01611 Car-Chr14:13002826 Car02g01508 Car-Chr2:9752581 1.39E-16 wgd
Car14g01611 Car-Chr14:13002826 Car08g00973 Car-Chr8:6472114 1.92E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g643 . . . . . . . . . . . . . Car14g01611 . . Cpe03g01499 . . . . . . . . . . . . . . . . . . Lsi05g01694 . . . . . . . . . . . . . Cmo14g01827 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012411 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4734 PF13912 zf-C2H2_6 5.50E-07 CL0361 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01611 Car_Chr14 FPKM 0.897797 1.295686 0.819242 1.00453 4.602235 4.936777 4.817732 1.69574 1.38093 1.206454