Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g01624 | ATGGAGGATTCTCGTAAGGGTAAGGATCAACAAAAGCAAGGCGACGACGGGATCAAGTACCGGGGAGTGCGCCGTCGACCATGGGGTAAATACGCTGCCGAGATTCGAGACCCCTCAAAGAACGGAGCCAGACAATGGCTCGGCACGTACGACACCGCCGAGGATGCAGCTAGGGCTTATGATCGGATGGCATTTCACTTGAAAGGCCATCTTGCTAGCTTGAATTTCCCTGGTGAATATTATGCTCGTGTCATGGGTTCTCCTCCTCACCCTCCTCACGTCTTTCCTTCTTCTGCTCCCATCAACCGGGGTTTCGACACCGGAGACGCTGGATCCTCGTCTTCTAACCCTGATCCACACCAAGTTATCGTGCTCGAGTATCTGGACGGCCGAGTTTTGGATGACCTTCTTGCACAAGAGGAGAAAAAGAAGAAGAAGAACACCATATAA | 450 | 52.0 | MEDSRKGKDQQKQGDDGIKYRGVRRRPWGKYAAEIRDPSKNGARQWLGTYDTAEDAARAYDRMAFHLKGHLASLNFPGEYYARVMGSPPHPPHVFPSSAPINRGFDTGDAGSSSSNPDPHQVIVLEYLDGRVLDDLLAQEEKKKKKNTI | 149 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 13046883 | 13047332 | - | Carg16563-RA | Car14g01624 | 161526 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g01624 | 149 | MobiDBLite | consensus disorder prediction | 89 | 120 | - | - | |
| Car14g01624 | 149 | ProSiteProfiles | AP2/ERF domain profile. | 19 | 77 | IPR001471 | GO:0003700|GO:0006355 | |
| Car14g01624 | 149 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Car14g01624 | 149 | Pfam | AP2 domain | 19 | 70 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car14g01624 | Car17g00147 | CCT | |
| Car08g00962 | Car14g01624 | CCT | |
| Car14g01624 | Car17g00147 | ECH | |
| Car08g00962 | Car14g01624 | ECH | |
| Car06g01142 | Car14g01624 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car14g01624 | Car-Chr14:13046883 | Car17g01253 | Car-Chr17:9495205 | 1.24E-32 | dispersed | |
| Car14g01624 | Car-Chr14:13046883 | Car17g00147 | Car-Chr17:921956 | 8.14E-24 | wgd | |
| Car14g01624 | Car-Chr14:13046883 | Car06g01142 | Car-Chr6:8477035 | 1.16E-21 | wgd | |
| Car14g01624 | Car-Chr14:13046883 | Car08g00962 | Car-Chr8:6429665 | 1.31E-38 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4736 | PF00847 | AP2 | 2.60E-14 | CL0081 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g01624 | - | - | csv:101213248 | 239.195 |