Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01630 ATGTCCCTAGAGCAGCTCAAGAAGCAAGCGTTTTCTTTCCTTAATGAAAGATTCAAAGTAGCCAGGCTCGTCTTCACTGACGTTACCCACGCAGAATTGTTGGCAGAGGAAGCAACAAACAAAGATCCATGTACCCCTGATGCTAAAACAATGACAACCATAGCTGAGGCATCCTTTGAGATAGATGATTATTGGAGAATTGTTGATGTCCTTCACAATCGGCTTCGTAGTGTTGAGTGGAAGCAGTGGAAACAATCCTACAAATCACTGGTACTCCTTGAGTTCTTGTTAACCCACGGACCAGAAGAGTTAGCTGACGAGTTCAAGAGAGATTCATATATCATCGAAGCACTTGGAACTTTTAAGCATGTAGATGAAAGGGGGTTCGACTGGGGTGAAATCATGCACAAAAAGTCACAATCGATACTACAACTACTGAAAGGAGGGCAGACTTTAAAAGAATCACGTTTGAGAGCTCTGAAAATAACGAGAGAAATTCAAGGATTTGGTAGTAGTTCATCACCTTCTTCGACATCATCAATACTGTCACCCAACTTTTCACCAAGCTTTTCGTTTGCATCAACAAGAACTTCATCATTTGGTTCCTATTCTACTACTTTGAGCCCCGCATGGAGTGATTTACATGAGGGAAACAATTTTGAAAACTCCCCATCCCCTGATGATGCCTTTGAAAGCCATATTTGGGGAAGAAAGGGAAATGACAACTCTACGGAAAAAAACTTTACTATCAAAGGACAACAACTTTGGGAATGCCCCCTAATCGAAGAGGATGAATCTCTACTTGACCCTGAGGATGAGGAAAAGAAACCAACAAGTTTACTGAATGAAGTTTGCACAAAGCTGGTGGCGTTAAGTCCTACCAGTCTGGAAGGAGCAGGATTTGGAAAAGCTTCTAATAAATGTGAAGATTGA 933 41.59 MSLEQLKKQAFSFLNERFKVARLVFTDVTHAELLAEEATNKDPCTPDAKTMTTIAEASFEIDDYWRIVDVLHNRLRSVEWKQWKQSYKSLVLLEFLLTHGPEELADEFKRDSYIIEALGTFKHVDERGFDWGEIMHKKSQSILQLLKGGQTLKESRLRALKITREIQGFGSSSSPSSTSSILSPNFSPSFSFASTRTSSFGSYSTTLSPAWSDLHEGNNFENSPSPDDAFESHIWGRKGNDNSTEKNFTIKGQQLWECPLIEEDESLLDPEDEEKKPTSLLNEVCTKLVALSPTSLEGAGFGKASNKCED 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13094437 13095883 + Carg16557-RA Car14g01630 161532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01630 310 Pfam ENTH domain 30 149 IPR013809 -
Car14g01630 310 ProSiteProfiles ENTH domain profile. 23 156 IPR013809 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01630 K12471 EPN; epsin - csv:101212041 444.121
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00544 Car-Chr1:3229151 Car14g01630 Car-Chr14:13094437 4.80E-57 transposed
Car04g00203 Car-Chr4:1115143 Car14g01630 Car-Chr14:13094437 6.29E-44 transposed
Car06g01132 Car-Chr6:8427604 Car14g01630 Car-Chr14:13094437 9.97E-12 transposed
Car14g01630 Car-Chr14:13094437 Car06g01131 Car-Chr6:8427060 3.57E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g725 . . . . . . . . . . . Cma14g01819 . Car14g01630 . . Cpe03g01521 Bhi01g00719 . . . Hepe05g1664 . . . . . . . . . Cone14ag0155 . . . Lsi05g01740 . . Cme06g00481 . . . . . . . . . . Cmo14g01857 . . . . . . . . . . . . . Cla05g00437 Cam05g0476 Cec05g0485 Cco05g0485 Clacu05g0473 Cmu05g0451 Cre05g0513 . Csa03g01199 Chy06g00463 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012486 0 2 0 0 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01630 Car_Chr14 FPKM 2.347682 1.854804 42.794579 37.809868 2.2718 2.121238 1.930981 0.0 0.0 0.0