Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01642 GAGATTGAGAGAGTGGGAGAGAGCTCCATCGAAATGGAAGGTAGTAGGAGAGCTATCGCAATCGGTCAGCTGCAGGACGCGAAGCGCTTGTCGGGAAAATCTTACAACCAGATAGCGGAAGAGACTGGCCTCACTAACGTCTATGTTGCTCAGCTTCTCCGGCGTCAAGCGCAACTTAAGCCTGAGACTGTCCCGAAATTGAGGGCCGCCTTGCCTCAACTTCTTGATGATCATATTCAAGAGATGATGCTGCCGCCAATGAGGTGCTACGATCCTTGTTTGATCCAAGAACCTACGATTTACAGATTGAACGAAGCAGTTATGCATTTTGGCGAGAGCATCAAGGAAATTGTTAATGAGGAGTTTGGCGATGGAATTATGTCAGCCATAGACTTCTACTGCTCAGTCGACAAGGTCAAGGGTGTTGATGGGAAGGACCGTGTTGTGATAACATTTGATGGTAAATATTTGCCCTACACAGAGCAGAGCATATGGCTTCCAGACGACCATCGTAGGAAAGTTGAGCGCGATTCTAAAGCTTGCAACACGGTTGCTCCTTCGATGGCGTTATCTGTTCTTCGAGCTATGGGTTCCACAGCCCGCCTCTCTCTTCTTCACAGGCGCCTCTTCTCATCCTCAACCACTCTTACACATCCTCCTTCACCTCCGTCTCTCACTCTTTGCCGTCGATCTCTCCCTCCACTTTCCCATGCCGTTCGATCTAACCCCTCTGCCTCCAGGTACACCTCGATTCGTTGCCGCGTCAATCGGACAGGTAACTCGTCGTACTCTCCCCAGAACTCTAACTCCAACTTCAGCGATCGTCCACCCACTGAGATGGCGCCTCTTTTCCCTGGCTGTGACTATGAGCATTGGCTCATCGTTATGGACAAGCCTGGAGGTGAGGGTGCCACTAAACAGCAGATGATTGATTGCTACATTCAGACCCTCGCTAAAGTTCTTGGCAGTGAAGAGGAAGCGAAGAAGAAGATTTATAATGTTTCTTGTGAGCGGTATTTTGGGTTTGGGTGTGAGATTGATGAAGAGACCTCCAACAAGCTCGAAGGTTTGCCTGGTGTTCTATTTGTTCTACCCGATTCTTACGTTGACCCTGAAAATAAAGACTATGGGGCTGAGTTGTTTGTGAATGGAGAGATAGTTCAAAGGTCACCAGAGAGACAGAGAAGGGTGGAGCCACAGCCACAAAGAGCTCAAGATAGACCAAGGTATAATGATAGAACCCGCTTTGTGAGACGCAGAGAAAACATGAGGTGA 1275 48.78 EIERVGESSIEMEGSRRAIAIGQLQDAKRLSGKSYNQIAEETGLTNVYVAQLLRRQAQLKPETVPKLRAALPQLLDDHIQEMMLPPMRCYDPCLIQEPTIYRLNEAVMHFGESIKEIVNEEFGDGIMSAIDFYCSVDKVKGVDGKDRVVITFDGKYLPYTEQSIWLPDDHRRKVERDSKACNTVAPSMALSVLRAMGSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSNPSASRYTSIRCRVNRTGNSSYSPQNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVLGSEEEAKKKIYNVSCERYFGFGCEIDEETSNKLEGLPGVLFVLPDSYVDPENKDYGAELFVNGEIVQRSPERQRRVEPQPQRAQDRPRYNDRTRFVRRRENMR 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13144713 13151401 - Carg16545-RA Car14g01642 161544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01642 424 Hamap Cyanate hydratase [cynS]. 1 179 IPR008076 GO:0008824|GO:0009439
Car14g01642 424 Pfam Cyanate lyase C-terminal domain 94 160 IPR003712 GO:0009439
Car14g01642 424 MobiDBLite consensus disorder prediction 391 413 - -
Car14g01642 424 MobiDBLite consensus disorder prediction 257 277 - -
Car14g01642 424 MobiDBLite consensus disorder prediction 257 276 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01642 - - - bhj:120084678 411.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01642 Car-Chr14:13144713 Car16g00387 Car-Chr16:2384902 3.93E-45 dispersed
Car04g02433 Car-Chr4:19403437 Car14g01642 Car-Chr14:13144713 3.80E-16 transposed
Car14g01642 Car-Chr14:13144713 Car06g01120 Car-Chr6:8372857 3.15E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g753 . . . . . . . . . . . Cma14g01831 . Car14g01642 Sed12g0452 . Cpe03g01534 Bhi01g00696 Tan10g0654 Cmetu06g1756 . Hepe05g1678 . . . . . . . . . . . . Cone4ag0351 Lsi05g01753 . . . . Blo07g00277 . . . . . Bma06g01611 . . Cmo14g01872 . . . . . . . . . . . . . . . . . . . . . Csa03g01186 Chy06g00450 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01642 Car_Chr14 FPKM 0.0 0.0 7.721689 8.974765 15.299642 10.945882 15.392422 0.177468 0.14884 0.146142