Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01653 ATGCCCGCCGCCGCTACCGGAGTCTCCTTCTTCACCACTCCCATAAGGGGTTCACGGTCCAATCCCTGGCTCTCCGATTCTCCCCTTGCAACCCCATCTACCCAGGTGTTGCCCTTACTGTCCCGCCCTCTGGCCGTTAAATCGGCTCCGCTTAGAGCTTTCTCAGAGAGGTGTCGCCCGGCTACGATCATCTCGGCCACCTTTGTGCAAGGAGAGGCGGCTTTGACGGTGGGGGTTGAAGAGGGTGCGGAGAAGGAAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCCGGGAGTACTAAGCTGTATTTTGGGAATTTGCCTTATAGTGTTGATAGTCCCCAGCTTGCGGCTATCGTTCAGGATTATGGGGTCGCCGAGCTTATTGAGGTTCTGTATGACAGGGATACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAACAGTATTGATGATTGCAATAAAGTCATTGAAAATCTGAATGGAGCTACTTATATGGGCAGAATTCTGAGGGTTAATTTCTCAGACAAACCTAAGCCCAAGGAACATTTGTTTCCAGAAACTGAGTATAAACTCTTTGTTCGAAACTTAGCTTGGTCAGTAACATCAGAAAGTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTCATCTATAACGGGGAGACCGGAAGGTCACGTGGTTATGGCTTTGTTTCTTACTCAACAAAATCAGAGATGGAAACAGCTCTTGTCGCTCTTAATGACGCGGTATTTGAAGGCAGGGTATTAAGAACAAATTTTTGTGCTGTCATCCTGTTGGGGGCGTCGGATGATACTTACATCAAGAAAAATGTTAGTGTAGTTTCTCATTCGAGGTATTTGAATGGTGTAGACGAGGGAATGCCTAGACTACTCAGAGAATTTCTTAGCATGAAACATTCAGCTGTAATGAACGTAATCAAGAGGATATTCGATGGAGTCTTGAGACGAGGTTTAAGGGTTTCGATAATGGGGACGCCCTTTCACATTCCGGTCACTGCTGCTCAGGTGGGAACCTACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCCGACTTTGTTCATCAGTTCTATTCTGATGCCAGTACTATGCTTCGTATTGATGGCAATTTCAGAGAGACCGCCACTGCAATGCTCGTATTTTTCTCTTTGTTCTTCTCCTTTTTCATGCTACAATCTTTTACGAATGTTACTGTTGAATTGTGGTGGCTTATGGCTGTTGTTTTTTCATCGATATTCTGTTGA 1293 45.94 MPAAATGVSFFTTPIRGSRSNPWLSDSPLATPSTQVLPLLSRPLAVKSAPLRAFSERCRPATIISATFVQGEAALTVGVEEGAEKEGGEAVDGGSPVESGSTKLYFGNLPYSVDSPQLAAIVQDYGVAELIEVLYDRDTGKSRGFAFVTMNSIDDCNKVIENLNGATYMGRILRVNFSDKPKPKEHLFPETEYKLFVRNLAWSVTSESLTQAFQEYGNVVGARVIYNGETGRSRGYGFVSYSTKSEMETALVALNDAVFEGRVLRTNFCAVILLGASDDTYIKKNVSVVSHSRYLNGVDEGMPRLLREFLSMKHSAVMNVIKRIFDGVLRRGLRVSIMGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRIDGNFRETATAMLVFFSLFFSFFMLQSFTNVTVELWWLMAVVFSSIFC 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13204521 13211657 + Carg16534-RA Car14g01653 161555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01653 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Car14g01653 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 173 IPR000504 GO:0003723
Car14g01653 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Car14g01653 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 271 IPR000504 GO:0003723
Car14g01653 430 ProSiteProfiles Nuclear transport factor 2 domain profile. 351 380 IPR018222 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01653 - - - cpep:111790085 491.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01107 Car14g01653 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00460 Car-Chr8:2948442 Car14g01653 Car-Chr14:13204521 1.02E-40 dispersed
Car14g00190 Car-Chr14:896053 Car14g01653 Car-Chr14:13204521 2.09E-11 dispersed
Car14g00336 Car-Chr14:1640525 Car14g01653 Car-Chr14:13204521 5.81E-10 dispersed
Car14g01653 Car-Chr14:13204521 Car17g00889 Car-Chr17:7412465 6.39E-09 dispersed
Car17g01270 Car-Chr17:9623654 Car14g01653 Car-Chr14:13204521 2.51E-16 dispersed
Car14g01653 Car-Chr14:13204521 Car06g01107 Car-Chr6:8309294 1.31E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01653 Car_Chr14 FPKM 0.624583 0.865548 3.887021 3.37742 1.512048 1.780713 1.534569 0.215156 0.163599 0.242271