Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01654 ATGTTGCACTCCACGGCTTCGTTTTCCATCTACACTGATGATGAAAATCAGGAACAAGTCATGGGATTAGAAGAATTTGAGAAGGGTATCACGATTGAAGTGAACAAAGAAGCTCTGGGTAGTGGTAATGATTTCTGTTTTTCGAAAGGGGCTATGGGGTTGATTCAAGAGGAAGAAATGGAAGATGGTGATGGCATGAACTCGATTGGGGATTTTGACGGCGGCGAGTTTGACCTCACACCGGCCAGTCCTCCGATGTATCTAGCGGCAGGACTTGGATTGGATGCTTCTGGTCTCGGCGGTGCGTATGATTCTGTGGATTTTTTTGACGAGAAGATGGTGGATGAACCGCCTGCAATCCATCCCTCGCTGCTTCTGAGGAAATATGTGCAGTCCTTATGGTGCCTCGCATTGTTCGATGATGGGCTCTGCACAGATCGAGAAATGGTGTCAGAGCTAGACAACGGGTGCGAGGACGCTGGACCTCCAAGGAGGTCGGAGGGAAAACTTGATGAAGCTGAGGAACAGTGCTATCAAGCTACAGTAACATACCCTGAAGATGCTGAAATTCTGATGCTGTATGCTCAGTTGGTTTGGGAAGTTCATCATGATCAAGCTAAAGCCTCAAGTTACTTTGAACGTGCAGCTGTTGTTGCTCCAGATAACAGCGATATTCTTGCAGCACGAGCTAAATTCCTGTGGGAACTGGACGACGAGGATGAAACTATGATACCAGGGGAAGAAGACGGGAACCCAGTTGGTAGTTCACCGCCCAAAGAAAGAACCGAACCAGTAGCTGACAATGGTGGGAGTGATCTGCAGGAGTCTTATGAGAAGATGCTGAAGGAGAACCCCACTGATCCATTGCTTCTGAAGAACTATGCTCGGTTCTTGCAACAGTCCAAAGCTGATCTCCAAGGAGCAGAGGAATACTACCACCGTGCGATCCAAGCCGACCCAAGCGACGGGGAAGTGTTAGCACAATATGCAAAATTGGCGTGGGAGCTTCATCACGACTACGATAAGGCGTCACATAACTTCGAGAGAGCAGTAGAAGCCTCTCCTACAAACAGCTATGTTCTTGGAGCATATGCAAGCTTCCTTTGGGAGACGGATGAATACCAAGAGGAAGATAGCCAAAATGACTCTCAGTGGCCTTCAAACACAGCGACAGTTTCTGTGGGAAATGCTTGA 1194 48.16 MLHSTASFSIYTDDENQEQVMGLEEFEKGITIEVNKEALGSGNDFCFSKGAMGLIQEEEMEDGDGMNSIGDFDGGEFDLTPASPPMYLAAGLGLDASGLGGAYDSVDFFDEKMVDEPPAIHPSLLLRKYVQSLWCLALFDDGLCTDREMVSELDNGCEDAGPPRRSEGKLDEAEEQCYQATVTYPEDAEILMLYAQLVWEVHHDQAKASSYFERAAVVAPDNSDILAARAKFLWELDDEDETMIPGEEDGNPVGSSPPKERTEPVADNGGSDLQESYEKMLKENPTDPLLLKNYARFLQQSKADLQGAEEYYHRAIQADPSDGEVLAQYAKLAWELHHDYDKASHNFERAVEASPTNSYVLGAYASFLWETDEYQEEDSQNDSQWPSNTATVSVGNA 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13211835 13214068 - Carg16533-RA Car14g01654 161556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01654 397 MobiDBLite consensus disorder prediction 380 397 - -
Car14g01654 397 MobiDBLite consensus disorder prediction 373 397 - -
Car14g01654 397 MobiDBLite consensus disorder prediction 241 271 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01654 - - - bhj:120092966 578.556
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01654 Car-Chr14:13211835 Car17g01269 Car-Chr17:9622341 1.16E-12 dispersed
Car14g01654 Car-Chr14:13211835 Car19g00184 Car-Chr19:1703282 3.77E-11 transposed
Car14g01654 Car-Chr14:13211835 Car02g01382 Car-Chr2:9101034 3.88E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g786 . . . . . . . . . . . Cma14g01846 . Car14g01654 . . Cpe03g01546 . . . . . . . . . . . . . . . . Cone7ag0353 . Lsi05g01776 . . Cme06g00446 Blo02g00686 . . . . . . . . . Cmo14g01890 . . . . . . . . . . . . . Cla05g00404 Cam05g0441 Cec05g0448 Cco05g0449 Clacu05g0438 Cmu05g0416 Cre05g0478 . Csa03g01164 Chy06g00426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009424 0 1 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01654 Car_Chr14 FPKM 21.138466 22.780502 14.016229 14.451089 16.578804 13.840981 16.384598 15.05701 15.948178 16.940666