Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01656 ATGGCGGTCGTGCATATTCGACATGCTTTGAAATACCCTGTGTCACAGTTCGGAGAATTAGGGAGCCAGACACTAAACGATGTACCAACGAGAACGCTGGGCTCCAAGAGATACGCTGTCCACATTGGTTATTCTAACGCGTGGAATTTTACACGTAGAAACAGTGAAAGGCAACAGCTTGAGAAGTTGCAGTTTGGAAAAGGTAGAAAATATTCAGGAGGAAGCATCAAAGCTGCTAAGAAGTTTAAAGATATTAATAATGTCCAAGACGATAAGTTCCTTTCTCACATTTCATGGTGGAAAGAGATGGTGGAATCATGCAAGAAACCGTCATCGGTTCAGCTGGTTAAGAGGCTTGACTTCTCCAATTTGCTCGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGAAGGAACACTTAACTGGGAGATACTACAGTTCAAGGCAAAGTTTCCTCGAGAAGTTTTGCTTTGTAGAGTTGGAGATTTTTACGAAGCAATTGGAATAGATGCTTGCATACTTGTCGAATTTGCTGGTTTGAATCCTTTTGGAGGTCAGCGTATGGATAGCGTTCCGAAAGCTGGTTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACTCGTAACGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAAGGACCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATCTCTGGGCATGCACACCCGGGCAGTCCCTATGTCTTTGGGCTTGTTGGGGTTGATCATGATCTCGACTTTCCAGAACCAATGCCTGTGGTCGGAATATCACGATCTGCAAGAGGCTATTGCATAAGCCTTGTGATAGAGACCATGAAGACATATTCGTCAGAGGATGGTTTGACAGAGGAGGCCTTGGTTACTAAGCTGCGCACTTGTCAATACCATCATTTATTTCTTCACACTTCATTAAGGAACAACTCCTCAGGTACTTGTCGCTGGGGTGAATTCGGTGAGGGTGGTCGGCTATGGGGGGAATGTAATTCCAGACATTTTGAGTGGTTCGATGGAAATCCTCTTACTAATCTTTTGTCTAAGGTTAAAGATCTTTATGGTCTTGATGATGAAGTTACATTTAGGAACGTAACGATATCGTCCGAAAATAGGCCACATCCATTAACACTGGGAACTGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCGTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGTATATCAGGGATCTTCTTCTCAATCCTCCTGCTTATGAGATCGCGACCACTATTCAAGCAACATGCAGGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCGCCCGCCAAGCTCGTGAAGTTATTGGAAATGAGGGAAGCCAATCATATTGAGTTCTGTAGAATGAAGAACGTACTCGACGAAATCTTACACATGCATAAAAATTGCGAGTTAAACAACATCCTGAAATTGTTGATGGATCCTTCATCTGTGGCAACTGGGTTGAAAATTGACTATGAAACATTTGTCGACGAATGTGAATGGGCTTCCAGTAGAGTTGGCGAAATGATTTTTCTCGATAGCGAAAGCGAAAGGGATCAGAAAATCAGTTCTTATTTTATCATTCCTAATGATTTTTTTGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAAAGGATTCACATTGAAGAAGTGTGTACAGAAGTAGAAAGTGCAGCTGAAGCACTGTCTCTAGCAGTTACTGAAGATTTCGTCCCGATCATTTCAAGAATCAAGGCTACTACTGCGCCGCTAGGAGGTCCGAAGGGAGAAATATTGTATGCTCGGGATAATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAGAAGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGTAAAAAGGTCGGGGACGAGTGGTTTACGACGAAGAAGGTGGAAGATGCTTTAACAAGGTACCAAGAGGCCAATGCCAAAGCAAAAGCAAGAGTAGTGGATTTGCTGAGGCAACTTTCCTCTGAATTGCTTGCTAAAATGAACGTTCTAATATTTGCTTCCATGTTACTCATTATCGCCAAGGCGTTATTCGCTCATGTGAGTGAAGGGAGGAGGAGAAAATGGGTTTTTCCTACCCTTGCTGCACCCAGTGATAGGTCCAAGGGCAGGAAATCAATGGAGGGGAAGGTTGGGATGAAGCTGGTTGGACTATCTCCGTATTGGTTTGATGTGATAGAAGGGAATGCTGTGCAGAATAGTATTGAGATGGAGTCGTTGTTTCTTTTGACGGGTCCAAATGGGGGTGGGAAATCTAGCTTGCTTCGATCCATTTGTGCAGCTGCTTTGCTTGGGATATGTGGATTTATGGTGCCAGCAGAGTCTGCCCTGATTCCTCATTTTGATTCTATTATGCTTCATATGAAATCTTTTGATAGCCCTGCTGATGGGAAAAGTTCTTTTCAGGTGGAAATGTCAGAGATGAGATCCATCATGAGTAGAGCAACGGAAAGCAGCCTCGTACTTATAGATGAAATCTGTCGAGGAACAGAAACAGCAAAAGGCACTTGTATTGCAGGGAGCATTGTTGAAGCTCTTGATAAAGTTGGGTGCCTTGGCATTGTCTCCACTCACTTGCATGGTATATTCAATTTGCCTTTAGATATCAATAACACTGTGTTCAAAGCAATGGGAACTGTCTGTACTGATGGCCGAACGGTTCCCACTTGGAAGTTGATCAGTGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCAAAGAATGAAGGAATCTGTGAAGCTATAATTCATAGGGCTCAAGATTTGTATCTCTCAAATTATGTTGAACAAGGGATTTCAGGAAAACAGAAGATGAATTTGTATCCCTCAAATTCTTCTCATGCAAGGCTTAATGGCAATCACAAACCCCATCTCCTGTCAAATGGTGTTACAGTAGAAGCTGAACGCCCAAAAACAGAGAAAACTAAGAAAAAGGTTGTCTCTTGGAAGGAAATTGAGGGTGCTATCACTGCAATATGCCAAAAGAAGCTGATAGAGTTTCATAAGGATAAAAACACATTGAAACCTGCAGAAATCCAATGTGTTTTGATTGATGCTAGAGAGAAGCCACCTCCATCGACAGTTGGTGCTTCGAGTGTGTATGTAATTCTTAGACCAGATGGTAAATTCTACGTCGGACAGACTGATGATCTAGAGGGTCGAGTCCATTCGCATCGTTTAAAAGAAGGAATGCGGGATGCTGCATTTCTTTATTTTATAGTACCTGGGAAGAGCTTGGCATGCCAGCTTGAAACTCTTCTCATCAATCGACTTCCTGATCACGGGTTACAGCTAACTAATGTTGCTGATGGAAAGCACCGAAATTTTGGCACGTCCAATCTCTTATCAGAGAATGTGACTGTTTGTTCATAA 3498 42.82 MAVVHIRHALKYPVSQFGELGSQTLNDVPTRTLGSKRYAVHIGYSNAWNFTRRNSERQQLEKLQFGKGRKYSGGSIKAAKKFKDINNVQDDKFLSHISWWKEMVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKEGTLNWEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEFAGLNPFGGQRMDSVPKAGCPVVNLRQTLDDLTRNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCISLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSGTCRWGEFGEGGRLWGECNSRHFEWFDGNPLTNLLSKVKDLYGLDDEVTFRNVTISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYIRDLLLNPPAYEIATTIQATCRLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELNNILKLLMDPSSVATGLKIDYETFVDECEWASSRVGEMIFLDSESERDQKISSYFIIPNDFFEDMESSWKGRVKRIHIEEVCTEVESAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYARDNQSVWFKGRRFAPAVWAGSPGEEEIKQLKPALDSKGKKVGDEWFTTKKVEDALTRYQEANAKAKARVVDLLRQLSSELLAKMNVLIFASMLLIIAKALFAHVSEGRRRKWVFPTLAAPSDRSKGRKSMEGKVGMKLVGLSPYWFDVIEGNAVQNSIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIMSRATESSLVLIDEICRGTETAKGTCIAGSIVEALDKVGCLGIVSTHLHGIFNLPLDINNTVFKAMGTVCTDGRTVPTWKLISGICRESLAFETAKNEGICEAIIHRAQDLYLSNYVEQGISGKQKMNLYPSNSSHARLNGNHKPHLLSNGVTVEAERPKTEKTKKKVVSWKEIEGAITAICQKKLIEFHKDKNTLKPAEIQCVLIDAREKPPPSTVGASSVYVILRPDGKFYVGQTDDLEGRVHSHRLKEGMRDAAFLYFIVPGKSLACQLETLLINRLPDHGLQLTNVADGKHRNFGTSNLLSENVTVCS 1165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13219765 13229190 + Carg16531-RA Car14g01656 161558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01656 1165 ProSitePatterns DNA mismatch repair proteins mutS family signature. 861 877 IPR000432 GO:0005524|GO:0006298|GO:0030983
Car14g01656 1165 CDD AAA 783 868 - -
Car14g01656 1165 Coils Coil 667 694 - -
Car14g01656 1165 Pfam MutS domain V 784 964 IPR000432 GO:0005524|GO:0006298|GO:0030983
Car14g01656 1165 Pfam MutS domain I 146 235 IPR007695 GO:0005524|GO:0006298|GO:0030983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01656 - - - csv:101209091 1986.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01656 Car-Chr14:13219765 Car16g00115 Car-Chr16:688390 2.30E-18 dispersed
Car14g01656 Car-Chr14:13219765 Car05g01249 Car-Chr5:11675669 9.69E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g793 . . . . . Bpe14g01287 . . . . . . . Car14g01656 . . Cpe03g01548 . . . . . . . . . . . . . . Cone14ag0185 . . . . . . Cme06g00444 Blo02g00683 . . Bda13g00033 . . Bma02g00746 . . . Cmo14g01893 . . . . . . . . . . . . . . . . . . . . . Csa03g01161 Chy06g00424 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01656 Car_Chr14 FPKM 0.736185 0.267508 0.81599 1.329054 1.030657 0.858193 1.1774 0.254574 0.0 0.0