Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01660 ATGATTTGTTCATTATTTGCCCCTGATTTTCCGTTTCCCTCTCTGAAACCCACGTTTCCCAGATCCCCACGAAGGCCACCGCTCTATTTTCCCAAGCACATTCTCTGTTTGCACCATCGAAACCACAATATCTTCGAAAACCCATCAAAACCCACAGGTATTTTCATCAACACGCTTGTGGAGAGCAACCCAGGTCATGTTTTGTATAGAGAGGCCAAGAAAAGAGAAGGGAATGGCAGAAAAAGAGAGTTTCCTCTTGTGGGTAGCTATCAAATGTTGCTGCTCTGTGGGCTTGGGTATTGGGTGCAGGGGTTTAGGTGCTTTCCATGGCTGGCTCTTAACTTTCACATGGCTCATTACCTTAATCTTCATCCTTCCATATTGCAACTCGTGCAGAATTCTGGAAACCTTCCTATGGTTGCTAAACCCTTGTATGGAATTCTGTCTGATGCTCTGTATATTGGTGGTGCTCGTAGAGTTCCTTATGTTTCAATTGGAGGGGAAGCCCTTCCTGCTTTAATGGCATGTGTTCTTCTAAGTAATCTTGGAGCATCCATAACAGAAGTTGCAAAAGATGCACTTGTTGCAGAATTTGGCCAAACAAACAAAATTTGTGGCCTTCAATCTTATACATTTATGGCTTTAGCTGTTGGTGGTGTCTTAGGCAACTTCCTTGGTGGATATAACTTACTGAGTTCACCGCCTAGAAAGATGTTTCTTCTCTTTTCTATTCTACTCTCTCTCCAACTTTCAATCTCATCAGCAACTAGAGAGGAATCCCTTGGTTTGCTGCAACTTCCAGAGCCTGATGTTCATGGTAAATCAATCATGGAAAATGTTAGAAATCAGATGTCGGACCTCGTAACGGCTATTCGTGATCCGAGTATATTTCGACCGCTGGCTTGGATTGTGGCTTCCATTGCCATGGTCCCTCTTCTAACAGGCTCTATATTTTGCTATCAAACACAATGCCTTCATCTTGATCCTTCCATAATTGGGATGTCTAGAGTGGTTAGTCAACTGGTTCTTCTTTCGGTCACCGTACTTTACGACCGCTATTGGAAACGAGTATCCATGAAGAAGCTAATTGGCATGGTGCAGATTTTGTACGCGTCTTCCTTTCTCCTCGACATTGTTTTGGTGAATCAGATAAATCTAAAGCTGGGCATTTCCAATGAGTTGTTTGCTCTTTGTTTTTCGGGTTTGGCCGAAACCATTGCACAGTTTAAGCTTTTACCATTTTCAGTACTCTTTGCAAGCTTAAGTCCAAAAGGTTGTGAAGGATCTCTGATTTCATTTTTTGCATCGGCGGTGTGCTTGTCTTCGATAGTTGGTGGTTTTTTCGGCATCGGGTTGGCTTCTTTGATTGGAATAAGATCAGGAAACTACTCAAGCTTGCCTGTGGGGATTTTGATACAGTTCATTGCAGCTTTATTGCCATTGATCTGTATCCATTTTGTTCCCACGATATCACCCGTCGTCGAAAGAGAAAAGAAGAGAATAGTTAGTAGAAGATCTAGGAGAAATAGAAGGGTCGGACGAGTCGTGTATAGTGATTCTGTATATGTTTATCGACGCGAGAGGGAATCCGAGATGCAGGGGTGA 1605 42.93 MICSLFAPDFPFPSLKPTFPRSPRRPPLYFPKHILCLHHRNHNIFENPSKPTGIFINTLVESNPGHVLYREAKKREGNGRKREFPLVGSYQMLLLCGLGYWVQGFRCFPWLALNFHMAHYLNLHPSILQLVQNSGNLPMVAKPLYGILSDALYIGGARRVPYVSIGGEALPALMACVLLSNLGASITEVAKDALVAEFGQTNKICGLQSYTFMALAVGGVLGNFLGGYNLLSSPPRKMFLLFSILLSLQLSISSATREESLGLLQLPEPDVHGKSIMENVRNQMSDLVTAIRDPSIFRPLAWIVASIAMVPLLTGSIFCYQTQCLHLDPSIIGMSRVVSQLVLLSVTVLYDRYWKRVSMKKLIGMVQILYASSFLLDIVLVNQINLKLGISNELFALCFSGLAETIAQFKLLPFSVLFASLSPKGCEGSLISFFASAVCLSSIVGGFFGIGLASLIGIRSGNYSSLPVGILIQFIAALLPLICIHFVPTISPVVEREKKRIVSRRSRRNRRVGRVVYSDSVYVYRRERESEMQG 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13246829 13249171 - Carg16527-RA Car14g01660 161562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01660 534 Pfam BT1 family 103 498 IPR039309 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01660 - - - cmo:103483535 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car14g01660 Car-Chr14:13246829 Car20g00818 Car-Chr20:5267079 7.92E-94 dispersed
Car14g01660 Car-Chr14:13246829 Car02g00330 Car-Chr2:2289095 2.20E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g806 . . . . . . . . . . . Cma14g01853 . Car14g01660 . . Cpe03g01552 . . . . . . . . . . . . . . . . Cone7ag0358 Cone4ag0370 Lsi05g01781 . . Cme06g00440 . Blo07g00290 Bda11g00652 . . Bpe13g00535 . . . . Cmo14g01898 . . . . . . . . . . . . . Cla05g00399 Cam05g0435 Cec05g0441 Cco05g0440 Clacu05g0430 Cmu05g0411 Cre05g0472 . Csa03g01156 Chy06g00419 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010245 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01660 Car_Chr14 FPKM 0.288166 0.583909 27.833303 26.825893 3.362608 3.695654 3.68177 0.479527 0.473422 0.454042