Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01683 ATGGCTGGTATTGATGTTTCGAAGTATGCGCATAGTCCGGTACACAAGGCTGTGGCCACCAGAGATTATACCAATCTCAAGAGAATCTTTGCAGGCCTTCCTCGGCTTTGCAATCCTTCTGAGATTCATACTGAGGCTGCTTCATTAGCTGAGGAAAGCAAGGCTGATGCCATTTCTGCTATGGTTGATTGTCGAGATGTCCCGAATCGGGATACTCCACTGCATTTGGCTGTAAAGCTTGGGGATGAGACTGCTACCGAAATGCTCATGGTTGCAGGGGCAGATTGGAGTTTGCAGAATGAGAATGGTTGGAGTGCACTTCAGGAAGCAATTTGCAGTAGACAAGAAGGGATTGCTATGATAATTGTTCGGCACTACCAGCCTCTGGCTTGGGCGAAATGGTGTCGGAGATTGCCTCGCTTGATTGAGACTATGCGAAGAATGAAGGATTTCTACATGGAAATCACATTCCACTTTGAGAGTTCGGTGATCCCGTTCATATCTAGAATTGCTCCTTCAGATACTTACAAGATCTGGAAAAGAGGTGCTAACTTGAGGGCAGATATGACACTGGCCGGTTTTGATGGATTTAGGATCCAACGTGCCGACCAGAGCGTTCTTTTTCTTGGTGATGGGACTGAGGATGGGAAAGTACCTTCTGGTTCACTCTGTATGGTCTCACACAAGGAGAAGGAGGTAATGAATGCTTTGGACGGTGCCGGTGCTCAAGCAACTGAAGAAGAGATTAGACAAGAAGTGACAGCAATGTCTCGGACTAATATATTTAGACCCGGGATTGACGTCACTCAGGCTGTTCTTTTGCCCCAGTTGACTTGGAGGCGCCAGGAGAAAACCGAATTGGTGGGTGCCTGGAAAGCTAAAGTATACGATATGCATAATGTGGTCATTAGTATCAAATCCAGGAGGGTCCCTGGGGCAATGACAGATGATGAATTCTTCTCATCATGTAATGAAAATGAAACTGAGAGCGAGGAGTTTGCTGACATTTTAACCGAGGATGAACGAAAGCAACTTGAGAATGCACTTAAATTAGATTCAACTGATTTGGCTTCTTCCGAGATTGGTGACGGGACTATTGCGCATCGGCACAGTTGTGTTGAACAAAGGGAAGTTCCTGTTGAGGATGTAAATGGATGTAGAAATGGAGAGATTCGACCAGAAAAGAAAGGATGGTTCGGGGGATGGAGGAAACGGGATAGCAAAAATGAAGGGCAAAAGAAGATTGCTCCACCAAGAAGCTCCCTTTCTATGGATGATAAGGTAGGTGATCTTCTAGGGGACTCTCCTCCTGAAAATCATAGCAGCATCCCTGGAAGACATTCTGTAGAGATAGTCTCTGAACACCGAAGAGGAAGGGAAATGAGAGCTACCTCTTCGACTTCTGAGAGCAAAAATCGGCATAAGGATGGGAGTCATGAAAACGAGTACAAGAAAGGGTTAAGACCCGTTCTTTGGCTCTCTCCGAACTTTCCTCTACAAACCGATGAACTATTGCCATTGCTGGATATTTTAGCTAACAAGGTCAAGGCAGTTCGGCGTTTGAGAGAACTGCTTACCACAAAACTCCCACTGGGAACGTTTCCAGTCAAGGTTGCCATTCCTGTGGTTCCAACGATCAGAGTGATTGTTACCTTCACAAAGTATGAAGAACTTCAACCGGTGGACGAGTTCGCGACGCCCCCATCAAGCCCTACAGCTGCAGCAGCAGGCAGGGAGAGCCCTTCCGCCACAAATGCCTCGAGTTCATCTTGGTTTCAGTGGATAAAAGCCCCGTATCAACGCACGAGTTCATCGTCCAGTGTTTCTAGCAGTAGGATAGAAACTCTCGAAGACCCGTTTGCCATCCCCCGTGATTATACCTGGGTTACCGCTGAAGCAAAGAAAAAGAAAATGCAGGAAAAGAACAAAGCAAAGAAAGGGAGAAGTCGCCGTGATTGA 1959 46.55 MAGIDVSKYAHSPVHKAVATRDYTNLKRIFAGLPRLCNPSEIHTEAASLAEESKADAISAMVDCRDVPNRDTPLHLAVKLGDETATEMLMVAGADWSLQNENGWSALQEAICSRQEGIAMIIVRHYQPLAWAKWCRRLPRLIETMRRMKDFYMEITFHFESSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQRADQSVLFLGDGTEDGKVPSGSLCMVSHKEKEVMNALDGAGAQATEEEIRQEVTAMSRTNIFRPGIDVTQAVLLPQLTWRRQEKTELVGAWKAKVYDMHNVVISIKSRRVPGAMTDDEFFSSCNENETESEEFADILTEDERKQLENALKLDSTDLASSEIGDGTIAHRHSCVEQREVPVEDVNGCRNGEIRPEKKGWFGGWRKRDSKNEGQKKIAPPRSSLSMDDKVGDLLGDSPPENHSSIPGRHSVEIVSEHRRGREMRATSSTSESKNRHKDGSHENEYKKGLRPVLWLSPNFPLQTDELLPLLDILANKVKAVRRLRELLTTKLPLGTFPVKVAIPVVPTIRVIVTFTKYEELQPVDEFATPPSSPTAAAAGRESPSATNASSSSWFQWIKAPYQRTSSSSSVSSSRIETLEDPFAIPRDYTWVTAEAKKKKMQEKNKAKKGRSRRD 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13380613 13383894 + Carg16504-RA Car14g01683 161585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01683 652 MobiDBLite consensus disorder prediction 562 586 - -
Car14g01683 652 Pfam GPCR-chaperone 186 627 IPR021832 -
Car14g01683 652 MobiDBLite consensus disorder prediction 397 413 - -
Car14g01683 652 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Car14g01683 652 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Car14g01683 652 MobiDBLite consensus disorder prediction 397 482 - -
Car14g01683 652 MobiDBLite consensus disorder prediction 449 482 - -
Car14g01683 652 MobiDBLite consensus disorder prediction 633 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01683 K21437 ANKRD13; ankyrin repeat domain-containing protein 13 - csv:101217083 1166.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01082 Car14g01683 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00802 Car-Chr12:7696059 Car14g01683 Car-Chr14:13380613 0 dispersed
Car12g00926 Car-Chr12:9264830 Car14g01683 Car-Chr14:13380613 0 dispersed
Car14g01683 Car-Chr14:13380613 Car06g01082 Car-Chr6:8130798 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g882 . . . . . . . . . . Cma06g01259 Cma14g01914 Car06g01082 Car14g01683 . Cpe08g00386 Cpe03g01613 . . . . . . . . . . . . . . . . . . Lsi05g01820 . . . . Blo07g00297 Bda11g00660 . . . Bma02g00733 Bma06g01627 . Cmo06g01269 Cmo14g01968 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000559 4 5 4 4 3 3 5 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 4 3 3 2 7 4 1 107
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01683 Car_Chr14 FPKM 28.12542 30.908823 25.319622 25.695953 28.841726 29.469217 29.861704 24.305616 21.870239 25.54217