Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01692 ATGGATAGCGACAAAAAGGTCTTCACCTTGAAGGAAGTCGCAGAGCACAACAATCACAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAATTCTTAGAAGACCATCCTGGTGGTGACGATGTTTTGTTATCAGCTACAGGAAAGGATGCAACCGACGACTTCGAAGACGTGGGGCATAGTGACAATGCAAGAGAAATGATGGATCAATACTATGTTGGAGAGATCGATGCTTCAACAATTCCAAAGAAGGTCGCATATACGCCTCCAAAGCAGCCTCATTACAATCAGGACAAGACATCAGAGTTCATCATCAAGCTTCTCCAATTCCTCGTTCCTCTTGCAATTTTGGGATTGGCAGTCGCCATACGCTTCTACACCAAACAAGCTTGA 405 44.69 MDSDKKVFTLKEVAEHNNHKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13456992 13459767 - Carg24759-RA Car14g01692 161594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01692 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
Car14g01692 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Car14g01692 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Car14g01692 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Car14g01692 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Car14g01692 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Car14g01692 134 PANTHER CYTOCHROME B5 1 132 - -
Car14g01692 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Car14g01692 134 PANTHER CYTOCHROME B5-LIKE 1 132 - -
Car14g01692 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 4 90 IPR036400 -
Car14g01692 134 SMART Cyt_b5_2 8 81 IPR001199 -
Car14g01692 134 Gene3D - 1 86 IPR036400 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01692 K23490 CYB5; cytochrome b5 - csv:101214209 268.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00943 Car-Chr2:6663140 Car14g01692 Car-Chr14:13456992 1.32E-69 dispersed
Car05g00397 Car-Chr5:2259404 Car14g01692 Car-Chr14:13456992 4.12E-33 dispersed
Car06g00835 Car-Chr6:6570904 Car14g01692 Car-Chr14:13456992 1.02E-51 dispersed
Car14g01692 Car-Chr14:13456992 Car15g00942 Car-Chr15:6720301 2.87E-68 dispersed
Car17g00424 Car-Chr17:2828181 Car14g01692 Car-Chr14:13456992 8.43E-13 dispersed
Car14g01692 Car-Chr14:13456992 Car17g00096 Car-Chr17:556509 9.55E-76 wgd
Car14g01692 Car-Chr14:13456992 Car19g00129 Car-Chr19:1153633 5.08E-65 wgd
Car14g01692 Car-Chr14:13456992 Car02g01436 Car-Chr2:9379656 1.07E-66 wgd
Car14g01692 Car-Chr14:13456992 Car06g01070 Car-Chr6:8049560 2.01E-94 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
Car02g00943 CST 1 134 NADPH P450 reductases AT5G53560 77.6 1.9e-58 222.2
Car15g00942 CST 1 134 NADPH P450 reductases AT5G53560 76.1 1.1e-56 216.5
Car14g01692 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.6e-52 202.6
Car06g01070 . 1 133 NADPH P450 reductases AT5G53560 69.2 1.3e-51 199.5
Car17g00096 . 1 133 NADPH P450 reductases AT5G53560 63.2 7.6e-47 183.7
Car02g01436 . 6 131 NADPH P450 reductases AT5G53560 63.5 4.6e-44 174.5
Car19g00129 . 42 169 NADPH P450 reductases AT5G53560 63.3 1.0e-43 173.3
Car06g01070 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car14g01692 . 1 132 NADPH P450 reductases AT5G48810 64.9 9.4e-48 186.8
Car17g00096 . 1 133 NADPH P450 reductases AT5G48810 63.0 1.0e-46 183.3
Car19g00129 . 40 170 NADPH P450 reductases AT5G48810 62.4 5.7e-45 177.6
Car02g01436 . 6 132 NADPH P450 reductases AT5G48810 62.0 3.7e-44 174.9
Car02g00943 CST 1 134 NADPH P450 reductases AT5G48810 58.1 1.4e-43 172.9
Car15g00942 CST 1 134 NADPH P450 reductases AT5G48810 57.4 1.8e-43 172.6
Car14g01692 . 22 133 NADPH P450 reductases AT2G32720 84.8 8.7e-51 196.8
Car06g01070 . 22 133 NADPH P450 reductases AT2G32720 83.0 4.3e-50 194.5
Car17g00096 . 22 133 NADPH P450 reductases AT2G32720 76.8 8.4e-46 180.3
Car02g01436 . 21 132 NADPH P450 reductases AT2G32720 70.5 2.8e-41 165.2
Car19g00129 . 59 170 NADPH P450 reductases AT2G32720 70.5 1.8e-40 162.5
Car02g00943 CST 22 133 NADPH P450 reductases AT2G32720 66.1 5.3e-40 161.0
Car15g00942 CST 22 133 NADPH P450 reductases AT2G32720 64.3 4.5e-39 157.9
Car07g01094 . 2 281 NADPH P450 reductases AT5G17770 81.1 2.5e-132 468.8
Car03g00161 CCT 2 281 NADPH P450 reductases AT5G17770 80.7 6.1e-131 464.2
Car06g00039 CCT 2 280 NADPH P450 reductases AT5G17770 77.5 1.1e-124 443.4
Car20g00007 . 1 253 NADPH P450 reductases AT5G17770 68.5 5.0e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01692 Car_Chr14 FPKM 3.277778 2.891256 0.0 0.159125 1.21027 1.569057 1.46557 0.0 0.133377 0.06057