Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01698 ATGGCTTGTGAAGCTGTACAACTGTGGACATTTAATGGATTAGTGGCTGCGTTTCTTGATCTTGGTATAGCTTTTCTTTTATTATGTGCAACGAGTCTTGTTTTCTTTACATCCAAATTTCTGGCGCTGTTTGGGTCATGTCTGCCTTGCCCTTGTGATGGACTATTTGGGAACCTTGGTAGTGATCACTGCTTCCAAAAGTTGTTAGTGGATTGTTCATCCAAAAGAATGTCTTCAGTCCTACATTCAACTAGAGAAAAGTTCCCATTGGATTCCATGTGGGATCAAGAGCCAAAATGTTGTTTTAAGTCGATGTCGGTGCACAAGAGGAATGCGAAGGAGGCGTGTGTTCAATTCAAAGGTGAAGCATCAGGTGATTCCTGGTTTAAAACCAGATCACCTCGAGGTATGATTTATGGAGACGTTCTCAATGTCAACGAATCGCGTTATAAAGGCGGTGTGGGTGGCAGGAAGATTGCATTGGTGTCTCCGAATGACGTTTTTCAGTCGGATGTGGAACTGGAAGACCTTTGTCATTCTCCTTCAAGCTTATGTGGATTTGGGGATAACAATAACGAGGATGGCTTCTTTTCTGTTGATTCTGGAGATGAAGGGGAGGCTTCATTAGACAACAGCAATCAATATAAAGTATTTCCCGATCTCGAACTAGATGATTCTTATGATGAGAAAATATGCGCAGAGATGTATGGAGCATCTGCTGAAGAGACTAGGAACAACTGCAGAGGGGAGTTATGCTTGGATGGTAATGAGAGTGATAGAATCAAACCATTGGCACAATCACTCGAAGAAGAGCAGAAAGCTCGCGCTACCTTGTACCTGGAGCTCGAGAAAGAGAGAAGCGCTGCTGCCACTGCTGCTGATGAGGCCATGGCTATGATATTACGTCTTCAAGAGGAGAAGGCTTGTATAGAAATGGAGGCTAGGCAATACCAGAGGATGATAGAGGAGAAAACTGCTTATGATGCTGAGGAAATGAGTATTCTTAAAGAAATTCTAGTGAGGAGAGAGCAGGAAATGCATTTCCTGAAGAAGGAAGTTGAAGCTTTTAGGAAAAGTTTGTTTGATAATGATGGAGTGAGTGTTGATATGCTTGACTCTGAATTTACACCCCCATGGCTTGAATGCATCAATGGATCCATTACAGACAAGCAATCTCATGAGTTACCATCAGTGGAGTCGCGAAACTTAATTTTTGAGTTTGGGGAAGAGTCCCCTTCGATTCAAGCGGTTGAATTCGCTGATGCTGCGAAAGCTAGTGGCGTGTTGTTGCACCAAGTTGCCGATTTCGAGCGTAGTGAAGAGATTGACAACGAGTTACAAGGAAAGGGCATGGTAGAAGATAAAAATGTATACATTGTACCAGGAGAAGTAAATGAACTGGAGCCATATCCGAAAAGCAATAGCAATGTGTCGAATGGCCTAGGTAAGGTCGAGCAGTGCACAGAATTGACTGCTGATGAACAAGAAAAAGTCTACGACGATTCATTCGACGGGTTGGCATTTGCGGAAATAGCTCTTCCTTGTGTTGAGTATAATTTGGAAAAGCATGGGAACCATCAAAAGCAGTGGACAAGAGATTTCAAATCTGTGAATGATACAAATGCCTGTCCTCATGATATTCATGTCATTGAAGATGAAATGCCCAATGAAGCAAGTGCTAATGCTCGTAAAGAAACATCGGTTAATGGTAGCTCGAGTATTCCAGTTAATTGTGATAGTTCATCCTTCAGTTTGTTGCAGAATGGACTAGACATCACGAGAAGCAGCTCAGATGCCACTGGAAGATTTCCACCAATGGCTCGTTCTCGAAGCAATTCCTTACGTTGTGAATTGCGTAGAAACTCGATGTCTGCTGTCGATTATGAAAGGTCGAAAATCGGCCATGAAGTTGAGTGGCTCAGAGGAAGGTTAAAGATTGTTCAAGAGGAAAGAGAAAAGCTCAAGTTCTCTGTGGAGAGCAAAGAGAAGGAGAACAATCAGTTGCAACTTTTAGAAAACATAACGAAGGGAACCATGGGGAAGAAAGTGAAGAAGAAGAACAATCGAGCCCCTCTGAAAGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCGAAGCAGCCCAACGGTGGAGATTGCTGTTGAGGATGTGTCAGTTGTTAAGGAGAGAAGCCAATGCCAGCACCTTGATAAATGCTTTAATTTCAAAGAGTTATCATCTAAACTTGCGTCCTCGGAACCTATTAGCTGTGAAGATTGTCAAGACAGTTCAGCTGATAGAAGGGGGAGTAAGGGGAAGGCTAAACATGGGAAGAAAAAAGGGGGAACTTCTGTGGATGTAAAACCTGATGCCAAAGCAATTTGGATTTGTTTGCAGTGTGGGCATTATGCTTGTGGAGGTATTGGGCTTCCTACCAACTCTCAGATTCATGCCGTTCGACATGTCAGGCAAACTCGACACCCTGTGGTGATTCAGTTTGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAACAAATTACTTCCAGTAGAGAAAACTGATGAGAATGGTGAACAAAGTGATGGCTTGTCTAATGTGGTGAAATTAATTAGGGATCGGTCGATCAAAGCCTCGCCTGTGGACATTGAGAACACATGGCATGCAAGCAGTGAAGTTACAGCTGCAACTAAATCAGAATGTTCAATGTTAAGTGATCTGGAGGGAAGAAATCATTATGTTGTAAAAGGATTGATTAATCTAGGTAACACTTGTTTTTTCAATTCAATCCTTCAAAATCTATTGGCCATTGATATGTTGAGAGATCATTTTATGAAATTGGAAGAATGTGTTGGACCTCTAACTATAGCCTTGAAGAAGATCTTTATAGAAGCAAGAATGGAAGGTAGAATGAAAGGTTCAATAAACCCAAGATCAGTTTTTGGCTGCATCTCTTCCAAAGCCCCTCAGTTCAAAGGATATGAGCAACACGACAGTCATGAATTGCTTCATGCCCTGCTTGATGGATTGTCTACTGAAGAGCTGACTTCGAGGAAGATGACAAAGTCTAAGGAAGAGAGAATGTCTGGAAATCCCACTCCTTCTTTTGTTGATGAGATGTTTGGGGGGGAAATATCAAGTGCTGTATGTTGCAAAGAATGTGGCCACACATCAACAGTTTATGAACCATTTCTCAATCTTTCTCTTCCCGTTCCAATGAAGAAACCTCTGGCCAAAAAGGTCCAACCAGTCTCTCGGGCAAAGAAGACAAAAGTGCCACCTAAGAGTAGTGGAAAGACGATTCGTAAAACTGGCAAGCCTTCAGATGTTGTCCCAGTTCAAATTGCCTCGCTCCCATCATCCAGTAATGAGCTTTCCCTTGCATCAGAGGCCAGCGCCGCCAGTAGCACAACTACCATCACGGAGAAGACTTTAAGTTCTCAGAATGTCTCAGATGTTAAAGAGCCTGAAAAAGAAGTTTTGATTGAGAATGGAGGAGAATGTGCTTCAGATAATTTGACGTGGATGGATTTCCTTGGTCCAGAACTAACTGTCGAAAATTGTGATATTTCCACTACTCAGGAGTCTGAAAATAACGTCGAAGTATTTATCAGTGACGATTCACAAAGCATCTCTGGGTCGGGTATGCAGGTGTCAACCCTTCACAATGAACCCAATCAAGGACCAGATTTTTCAGTGAATTCATGGGATGAATCCCCTTTACAGGTTCAAGCCTCTGAAGTTTTGCTGCTCCCTTACAAGGAAGAGAGCTCCACTGCTGAAGTAGCAAAAGCAGATGATCAAGCTTCCTCATCAATTTTGGGATGTGCTCAAGATGATTTTGAGGGATTTGGCCTTGGTGATATGTTTGATGAGCCTGAAATCCCCATAGGGCCCATTGCGAGGCCCTCCGCTGCAAATGAAGTTGCAGAGAGTAGTTTTGTTAGCGAGTCTGAGCCTGAGGAAGTTGATAATACTAATGCTCCCGTCTCTGTGGAGAGTTGTCTAACTTATTTCACAAAGCCAGAACTTCTGTCCAACGAAAATGGATATAACTGTGAGAAATGCTCAAAAAGGCTACAACAACAAAGGTTGGAAATGAAGAAGCAATCAAAAGTTGCTCGCAAAGCTGTAGCAAATGGATATCAAACTGATGTAGGGGGTGATATATCTAGTTTCAACGTGGACTCTTCAGTTGAAGTAAAAAATCAAAGAAATATGAACTTAATAAATGGTTCTTTAAGTCATAGTAGCGGTGAAAGCTCGAATTTGAAAGAAAATGCAGATTGCTCCAGTCGAGATAGAACAAAACCTGTCGATTGCCAGAAAGGCAAGATGGATTCTCTTGTTTTGAATGAAGATGAAGCTAAGGTTGACAAAGATATGAATCCTGGCCTAGCATATGCTTCAGGTTGTAACAACACCAGCAATCAAGAGAATTCTGATGATAAATCCGGGTCTTATCTTTCCAACGATGATCCTAAAGGCAGGGGACTTGCAAAAACTAATATTGAGTCCTTGAGTTCACAAATATCTGCCGAGAACCAACCAGAAAAAAGTGAGGATTGTGAGATGAATTCTGATTCAACAATTGTGAATGTGAAAAGAGATGCAACAAAGAGGTTTCTCATTCACAAGGCCCCTCCTATCTTGACAGTTCATATAAAGAGGTTCAGTCCGGATGCTCGGGGTCGTTATAGTAAATTGAACGGCCACGTCAAATTCAAGGAAACAATTGATCTCAAACCATACATGGATACTAGGTGTGCAGATAGGGACAAGTGTAAATATCGGTTGGTCGGGGTCGTGGAGCACTCGGGATCTATGAGAGGAGGCCATTATGTTGCATACGTGAGAGGGGGCAACAGGAAGAGGAGGAATGGGGAAGCTGAAGAAGATGCTTCTGTTTGGTATTATGCAAGTGACGCCTGCGTAAACGAGGTTAGCCTGGACCGGGTTCTTGGCTGCGAGGCGTACATCCTATTTTATGAGATAACAGGTCAAATCTTTGGCTAA 5001 42.69 MACEAVQLWTFNGLVAAFLDLGIAFLLLCATSLVFFTSKFLALFGSCLPCPCDGLFGNLGSDHCFQKLLVDCSSKRMSSVLHSTREKFPLDSMWDQEPKCCFKSMSVHKRNAKEACVQFKGEASGDSWFKTRSPRGMIYGDVLNVNESRYKGGVGGRKIALVSPNDVFQSDVELEDLCHSPSSLCGFGDNNNEDGFFSVDSGDEGEASLDNSNQYKVFPDLELDDSYDEKICAEMYGASAEETRNNCRGELCLDGNESDRIKPLAQSLEEEQKARATLYLELEKERSAAATAADEAMAMILRLQEEKACIEMEARQYQRMIEEKTAYDAEEMSILKEILVRREQEMHFLKKEVEAFRKSLFDNDGVSVDMLDSEFTPPWLECINGSITDKQSHELPSVESRNLIFEFGEESPSIQAVEFADAAKASGVLLHQVADFERSEEIDNELQGKGMVEDKNVYIVPGEVNELEPYPKSNSNVSNGLGKVEQCTELTADEQEKVYDDSFDGLAFAEIALPCVEYNLEKHGNHQKQWTRDFKSVNDTNACPHDIHVIEDEMPNEASANARKETSVNGSSSIPVNCDSSSFSLLQNGLDITRSSSDATGRFPPMARSRSNSLRCELRRNSMSAVDYERSKIGHEVEWLRGRLKIVQEEREKLKFSVESKEKENNQLQLLENITKGTMGKKVKKKNNRAPLKEKRVSSSSPRKVPQRSSPTVEIAVEDVSVVKERSQCQHLDKCFNFKELSSKLASSEPISCEDCQDSSADRRGSKGKAKHGKKKGGTSVDVKPDAKAIWICLQCGHYACGGIGLPTNSQIHAVRHVRQTRHPVVIQFENPQLRWCFSCNKLLPVEKTDENGEQSDGLSNVVKLIRDRSIKASPVDIENTWHASSEVTAATKSECSMLSDLEGRNHYVVKGLINLGNTCFFNSILQNLLAIDMLRDHFMKLEECVGPLTIALKKIFIEARMEGRMKGSINPRSVFGCISSKAPQFKGYEQHDSHELLHALLDGLSTEELTSRKMTKSKEERMSGNPTPSFVDEMFGGEISSAVCCKECGHTSTVYEPFLNLSLPVPMKKPLAKKVQPVSRAKKTKVPPKSSGKTIRKTGKPSDVVPVQIASLPSSSNELSLASEASAASSTTTITEKTLSSQNVSDVKEPEKEVLIENGGECASDNLTWMDFLGPELTVENCDISTTQESENNVEVFISDDSQSISGSGMQVSTLHNEPNQGPDFSVNSWDESPLQVQASEVLLLPYKEESSTAEVAKADDQASSSILGCAQDDFEGFGLGDMFDEPEIPIGPIARPSAANEVAESSFVSESEPEEVDNTNAPVSVESCLTYFTKPELLSNENGYNCEKCSKRLQQQRLEMKKQSKVARKAVANGYQTDVGGDISSFNVDSSVEVKNQRNMNLINGSLSHSSGESSNLKENADCSSRDRTKPVDCQKGKMDSLVLNEDEAKVDKDMNPGLAYASGCNNTSNQENSDDKSGSYLSNDDPKGRGLAKTNIESLSSQISAENQPEKSEDCEMNSDSTIVNVKRDATKRFLIHKAPPILTVHIKRFSPDARGRYSKLNGHVKFKETIDLKPYMDTRCADRDKCKYRLVGVVEHSGSMRGGHYVAYVRGGNRKRRNGEAEEDASVWYYASDACVNEVSLDRVLGCEAYILFYEITGQIFG 1666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13492552 13501691 + Carg24765-RA Car14g01698 161600

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01698 1666 Pfam Zein-binding 264 353 IPR007656 -
Car14g01698 1666 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 912 927 IPR018200 GO:0004843|GO:0006511
Car14g01698 1666 Coils Coil 644 664 - -
Car14g01698 1666 Pfam Ubiquitin carboxyl-terminal hydrolase 912 1658 IPR001394 GO:0004843|GO:0016579
Car14g01698 1666 MobiDBLite consensus disorder prediction 1124 1146 - -
Car14g01698 1666 ProSiteProfiles GTD-binding domain profile. 259 357 IPR007656 -
Car14g01698 1666 MobiDBLite consensus disorder prediction 1124 1151 - -
Car14g01698 1666 MobiDBLite consensus disorder prediction 752 781 - -
Car14g01698 1666 ProSiteProfiles Zinc finger UBP-type profile. 727 864 IPR001607 GO:0008270
Car14g01698 1666 Coils Coil 293 320 - -
Car14g01698 1666 MobiDBLite consensus disorder prediction 1076 1091 - -
Car14g01698 1666 Pfam Zn-finger in ubiquitin-hydrolases and other protein 753 844 IPR001607 GO:0008270
Car14g01698 1666 MobiDBLite consensus disorder prediction 1405 1495 - -
Car14g01698 1666 MobiDBLite consensus disorder prediction 1503 1522 - -
Car14g01698 1666 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 911 1661 IPR028889 -
Car14g01698 1666 MobiDBLite consensus disorder prediction 1405 1421 - -
Car14g01698 1666 MobiDBLite consensus disorder prediction 1072 1106 - -
Car14g01698 1666 MobiDBLite consensus disorder prediction 1422 1456 - -
Car14g01698 1666 MobiDBLite consensus disorder prediction 1463 1482 - -
Car14g01698 1666 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1592 1609 IPR018200 GO:0004843|GO:0006511
Car14g01698 1666 MobiDBLite consensus disorder prediction 680 712 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01698 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1572.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00191 Car-Chr8:1194366 Car14g01698 Car-Chr14:13492552 1.35E-47 dispersed
Car14g01698 Car-Chr14:13492552 Car17g01173 Car-Chr17:9004416 5.20E-25 dispersed
Car14g01698 Car-Chr14:13492552 Car06g01065 Car-Chr6:8014655 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01698 Car_Chr14 FPKM 0.0 0.0 0.0 0.290801 0.0 0.0 1.078885 1.101569 0.314311 1.267765