Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car14g01705 AGGATCGGTAAGGATGTAAAGTTTTTCAAAGAAAACACCTCTACATATATGGAATGGAAGCCAAGATTGCTTTTATATCGATTGCCGCTCCCTCTTTCCCTTCCCCTTTCTCCCTTTCTTTTCCCCATTTCTTCATCTTCCGCTTCGTCTCGCCAAGTTTCTTGGGTTTCCTCTTTCGATCGGCCTGCTCCAGCCGCAGTCCGCCGTTCCCTTCTCCTCCAGAGAGCAAGAGTTGTTGAGAGAAGAACAAGATTGGACATTGACTTAAATTGTCCACCCCCGGATGAGTGCATTGACCCAACTGGCCCTCACGACGAAGCGGCACAGTACAATAATCATCACCGAGAACAAGCTACAGACGCGGTTGATGAGGACATTGCTATAATCTCCCCTCGGAAATTTGCTGAAGCCAGGAAGAATTTTCGAAGAAACCACTTTGAGAGTAGCTATGGTGTAGTCGTCAGACGTAATGGCAGCACAGAAGTTTATAGTGCTCTCACAGATGTATCAAGTTGGCCCCCCTTTACAATTTGGTCGCCCCGTACGAATAGGAATAGTGTATCCATACAGGAACAACAAACAACTCACAACTTGGACCTCCGCTTAAGCTGTGAAACCAGTAGTAGGGCCACTAAGGTAAAAACTGACATTGTTATTCCTTCTGCACCTGCACTAAATAGTAGCATCACACCTGCAGATCGGAAGTTGCGGTGTGCGATCTGCATAGAACCATTGGTCGAAGAAACGACGACAAAATGCGGGCACATTTTCTGCAGGAATTGCATTGAAATAGCCATTGCTACTCAACACAAATGTCCCATATGTCGGCGCCTTTATGAATGGCTTTCTTCTTCCTTGTTTATCCATGGCGGTAACGAATCTCAAACCAGGGGAATAACGCGAGGAATCTCTCTCGGTTCTGTGCGAATTCCGGCTGTCGATGAAGAAAATAATGCCGAAATCGATGGAAGCTACACCGTCTGTGTCTTCAAGCCTCGATCTCCAAGCAGTTCGCAGCTAGAAGAGTTGCAGAGATCTTTGGCGGAAGATGAAGCTTATAGCACGGATTCATTAGGTTCTGAGAAGTTACTGAAGGAATGCGCTCTCCATCTCGAGAGCAGACTACAGCAGGTTCTGTCAGAATGCTCTAACGTTGATAGTTTCTTGGGGATTGATGATTTAGATGCATATGTGGAACACATGAAAGAGGAACTCGTTGCGGTGGAAGCTGAAAGCAGCAAAATCTCCAATGAGATAGAGCCTCCTATTTGTATTGACGTCCTTCTTTTGCTTCCGATCACAGGTTCTAATAAATTAGAGGTGGATCTCGAATTATTAGACGTGTCGTTAGATCGTTTTACATCACAGGATACTGAGAAGGAAACATTTAATTTCTGCTCTATGAATGGTGAAGACCAAATGAACGTGATAGTTGACTGTGAATGCAATGCTTTTGAGGTTTTGGAACTTGATAGTCATATCGAGAAGAATAAAAGAATTCTGAAATCTTTGCAGGAAGTAGATGAGATATTTAAAAGCATCACTGCGCCTTCTTGTAGTGCTCTTTTCTTGCCTTTTCTTTGTTCTGCAGAGCCCCACGATTCTGTTGAGGACACAATTGGGGGTCTGAAGGTCATTGGTGTTGCTGATAATTTCATTAGATTGTCATTACGTACACACATTCCAAACTTGGAAGATTTTTCAAGCTTACAGAGACTTGAAGGAATGATCGAGCCATCGGAATTGAATCACGAGTTGCTAATAGAAGTTTTGGAAGGAACAATGGAGCTAAAGAATGCTGAGATCTTTCCTGGTGATGTCCACTTGCACGATATCATCAATGCTTCAAAGTCAGTCAGCAATTCATTGGAATGGTTTGTGAAAAAAGTACAAGATAGAATTGTTTTGTGTACTCTTAGGCGATTTGTTGTGAAGAGTGCAAACAAATCAAGTCATTCCTTTGATTACATAGACCAAGACGAAACGATAGTATGTTGTATGATTGGAGGGATTGATGCGTTTATTAAGGTGTCTCAAGGCTGGCCACTAGCCGATTCTCCACTGAAACTTGTATCACTCAAGAGCTCAGACCATTATACAAAAGGTGCTTCCTTAAGCCTCGTTTGCAAGGTGGAGAAAATGGCAAATTCCTTGGACGCACGTATTCGCCAAAATCTATCAAGCTTTGCAGACGCTGTTGAAAAAATATTGAAGGAGCAAATGCATTTAGAACTCCAAGCTGACGGCGGTCTTTGA 2256 43.26 RIGKDVKFFKENTSTYMEWKPRLLLYRLPLPLSLPLSPFLFPISSSSASSRQVSWVSSFDRPAPAAVRRSLLLQRARVVERRTRLDIDLNCPPPDECIDPTGPHDEAAQYNNHHREQATDAVDEDIAIISPRKFAEARKNFRRNHFESSYGVVVRRNGSTEVYSALTDVSSWPPFTIWSPRTNRNSVSIQEQQTTHNLDLRLSCETSSRATKVKTDIVIPSAPALNSSITPADRKLRCAICIEPLVEETTTKCGHIFCRNCIEIAIATQHKCPICRRLYEWLSSSLFIHGGNESQTRGITRGISLGSVRIPAVDEENNAEIDGSYTVCVFKPRSPSSSQLEELQRSLAEDEAYSTDSLGSEKLLKECALHLESRLQQVLSECSNVDSFLGIDDLDAYVEHMKEELVAVEAESSKISNEIEPPICIDVLLLLPITGSNKLEVDLELLDVSLDRFTSQDTEKETFNFCSMNGEDQMNVIVDCECNAFEVLELDSHIEKNKRILKSLQEVDEIFKSITAPSCSALFLPFLCSAEPHDSVEDTIGGLKVIGVADNFIRLSLRTHIPNLEDFSSLQRLEGMIEPSELNHELLIEVLEGTMELKNAEIFPGDVHLHDIINASKSVSNSLEWFVKKVQDRIVLCTLRRFVVKSANKSSHSFDYIDQDETIVCCMIGGIDAFIKVSQGWPLADSPLKLVSLKSSDHYTKGASLSLVCKVEKMANSLDARIRQNLSSFADAVEKILKEQMHLELQADGGL 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 13540030 13548969 + Carg24772-RA Car14g01705 161607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car14g01705 751 ProSiteProfiles Zinc finger RING-type profile. 238 276 IPR001841 -
Car14g01705 751 ProSitePatterns Zinc finger RING-type signature. 253 262 IPR017907 -
Car14g01705 751 Pfam Zinc finger, C3HC4 type (RING finger) 237 275 - -
Car14g01705 751 Coils Coil 391 418 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car14g01705 - - - cmos:111432106 686.026
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car06g01057 Car14g01705 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01058 Car-Chr6:7938715 Car14g01705 Car-Chr14:13540030 3.53E-91 dispersed
Car14g01705 Car-Chr14:13540030 Car11g00169 Car-Chr11:921605 3.07E-06 dispersed
Car14g01705 Car-Chr14:13540030 Car19g00134 Car-Chr19:1176327 3.24E-23 wgd
Car14g01705 Car-Chr14:13540030 Car02g01429 Car-Chr2:9356407 4.81E-21 wgd
Car14g01705 Car-Chr14:13540030 Car06g01057 Car-Chr6:7930428 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g942 . . . . . . . . . . . . Car06g01057 Car14g01705 Sed02g1523 Cpe08g00409 Cpe03g01605 Bhi01g00203 Tan10g0501 Cmetu06g1022 . . . . . . . . . . . . . Cone7ag0406 . Lsi05g01855 . . Cme06g00370 . . Bda11g00340 . . Bpe13g00866 . . . . Cmo14g01959 . . . . . . . . . . . . . Cla05g00334 Cam05g0366 Cec05g0370 Cco05g0371 Clacu05g0361 Cmu05g0346 Cre05g0410 . Csa03g01082 Chy06g00351 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009546 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car14g01705 Car_Chr14 FPKM 6.412162 4.865613 62.643135 49.325096 238.22139 282.621613 217.095612 27.152103 25.489378 24.475664