Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car14g01771 | ATGGCAGTGATTCATAGCCGTTGGATCCTTATTGTTCTTGTTGTTCTTAATTTTCCGGCTGCCATTTTTAGTTATTCCGAAAAAGAATTAAAAAATTGGTGTAGCCAAACACCATATCCAGCTCCATGCGAGCAATTTATCAAAGCCAAAGCCACCGCCAAACATTCCCCAATCGCCACTAAATCCCATTTCCTTAAACTCTTGGTCGAAACGGCACTCGACGGCGCCGTTTCGGCCCAAAAAACCGCGCTGTCTCTCGGCCCAAAATGCCACAATGGCCGAGAAAAATCAGCATTGACCGACTGCGTTGACCTTTACAATCAAATCATCTCCCGTCTCAACCGCTCCGCCGACCGCTGCTCCTCCGTCGACGCCCAGACTTGGCTCAGCGCCTCCCTCACCGCCCTCGACACCTGCCGGAACAGCCTCCAGGAGCTCGGGGTTTCGGCCTTCGGCTACCCTTTGACGAGCAATAATGTTTCCAAGCTCATTAGCGATGGGTTGTCTGTGAATAAGCCGGCGTCACCCCAGGGGTTTGAGCCAACCATGGCGGAGGGGTTTCCGACGTGGGTTAGGCCCGGTGACCGGAAACTGCTGCAGTCGGGGTCTCCGAGTGCGGATGTGGTGGTGGCGAAGGACGGGTCTGGGAATTTTAAGACCGTGAAGGAGGCGGTCGCCGCCGCGAAAGGCGGCGGGAGATTTGTAATATATGTGAAGGCGGGGGTTTATAGTGAAAACCTTGAGATTAATGCTAAGAATGTCATGTTGATCGGCGACGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGCGGTTTCACCACGTTTAGATCCGCCACCGTTGCCGTTGATGGAGATGGCTTTATCGCGCGAGATATAACCTTCAGAAACACAGCCGGAGCGGCGAAGCATCAGGCGGTGGCGCTCCGATCGGGGTCCGACCTGTCGGTCTTCTATCGCTGTGGCTTCGAAGGCTATCAAGATACTCTCTACGTCTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACTGTCGATTTCATCTTCGGCAACGCCGCCGTCGTACTCCAAGATTGCAACATCATCGCCCGCGATCCTCCGAATAGGACTATCACAGTCACCGCCCAGGGCCGATCAGATCCGAATCAGAACACCGGAATCTCAATCCATAATAGCCGAATCACGTCCGCCGGCGGCCTCAGCGGCGTCAAAGCCTATTTAGGCCGGCCGTGGAGGCAGTACTCGCGGACAGTTATTATGAAATCGTCGATCGGCGGATTCATCAGTCCGGCCGGGTGGCTAGAATGGAGCGGTAATTTTGCCCTAAATACACTCTATTACGGCGAATATATGAATACCGGTCCGGGAGCTTCGACGGCGAATCGAGTGAAATGGAAGGGCTATCGTGTAATTACCAGTGCGACGGAGGCCTCCAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTACCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTAG | 1530 | 54.05 | MAVIHSRWILIVLVVLNFPAAIFSYSEKELKNWCSQTPYPAPCEQFIKAKATAKHSPIATKSHFLKLLVETALDGAVSAQKTALSLGPKCHNGREKSALTDCVDLYNQIISRLNRSADRCSSVDAQTWLSASLTALDTCRNSLQELGVSAFGYPLTSNNVSKLISDGLSVNKPASPQGFEPTMAEGFPTWVRPGDRKLLQSGSPSADVVVAKDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENLEINAKNVMLIGDGIGKTVITGSRSVGGGFTTFRSATVAVDGDGFIARDITFRNTAGAAKHQAVALRSGSDLSVFYRCGFEGYQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVLQDCNIIARDPPNRTITVTAQGRSDPNQNTGISIHNSRITSAGGLSGVKAYLGRPWRQYSRTVIMKSSIGGFISPAGWLEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYRVITSATEASKFTVGNFIAGGSWLPSTGVPFTSGL | 509 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 14 | 13895966 | 13899379 | - | Carg14849-RA | Car14g01771 | 161673 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car14g01771 | 509 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 28 | 171 | IPR035513 | - | |
| Car14g01771 | 509 | SMART | PMEI_2 | 25 | 170 | IPR006501 | GO:0004857 | |
| Car14g01771 | 509 | Pfam | Pectinesterase | 207 | 494 | IPR000070 | GO:0030599|GO:0042545 | |
| Car14g01771 | 509 | PANTHER | PECTINESTERASE | 11 | 508 | - | - | |
| Car14g01771 | 509 | SUPERFAMILY | Pectin lyase-like | 204 | 508 | IPR011050 | - | |
| Car14g01771 | 509 | Pfam | Plant invertase/pectin methylesterase inhibitor | 30 | 167 | IPR006501 | GO:0004857 | |
| Car14g01771 | 509 | ProSitePatterns | Pectinesterase signature 2. | 347 | 356 | IPR033131 | - | |
| Car14g01771 | 509 | CDD | PMEI-like_3 | 33 | 175 | - | - | |
| Car14g01771 | 509 | TIGRFAM | PME_inhib: pectinesterase inhibitor domain | 10 | 159 | IPR006501 | GO:0004857 | |
| Car14g01771 | 509 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 24 | 172 | IPR035513 | - | |
| Car14g01771 | 509 | Gene3D | - | 202 | 509 | IPR012334 | - | |
| Car14g01771 | 509 | PANTHER | PECTINESTERASE | 11 | 508 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car06g00990 | Car-Chr6:7563693 | Car14g01771 | Car-Chr14:13895966 | 1.18E-153 | dispersed | |
| Car14g01771 | Car-Chr14:13895966 | Car17g00613 | Car-Chr17:5775345 | 2.28E-143 | dispersed | |
| Car15g00914 | Car-Chr15:5738873 | Car14g01771 | Car-Chr14:13895966 | 7.46E-53 | dispersed | |
| Car16g00165 | Car-Chr16:917000 | Car14g01771 | Car-Chr14:13895966 | 3.19E-60 | dispersed | |
| Car18g01228 | Car-Chr18:11816241 | Car14g01771 | Car-Chr14:13895966 | 7.36E-128 | dispersed | |
| Car16g00869 | Car-Chr16:6512627 | Car14g01771 | Car-Chr14:13895966 | 3.79E-175 | transposed | |
| Car14g01771 | Car-Chr14:13895966 | Car02g00734 | Car-Chr2:5402566 | 9.69E-39 | wgd | |
| Car14g01771 | Car-Chr14:13895966 | Car06g00989 | Car-Chr6:7551686 | 4.16E-24 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car14g01771 | K01051 | - | csv:101217552 | 873.233 |