Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00042 ATGATTGGTCAGCAGAGTATGAGCTCTTCATCAGCTCAGCTCTATGCATCAAGGATGGGCATCTATGAGCCATTTCACCAGATCAACTCATGGGGTAATGCCTTCGGTACTCGACTCGATACCAGCATATCGCCTATTATAAAAGTGGACGACTGTGTAGACAATAAACCTGAGTTCGTTCCTTTCGAATCGATGGATCATCACGAGAGCAGTCAAGAAACGAACAAGCCAATCGATGATAAGGTACAACGTCGTTTAACACAAAATCGAGAAGCAGCTCGTAAAAGCCGTATGAGGAAAAAGGTTTATGTACAGCAGTTAGAAACTAGCCGTTTGAAGCTGGCACAGTTGGAGCAGGAGCTAGAAAGAACCAAACAGAAGGGTGTATACACAGCAAGCTGCTTAGCAGATACCAGCCACTTGGGATTCAGCAGATTGGTAAACCCAGGGATTGCTGCATTTGAGATAGAATACAATCACTGGGTTGAAAAGCAAGAGAGACAGATCACTGAACTCAGAAAGGCATTGCAGCAAGTTCATATAATAACTGATACAGAACTCCAAATTTTAGTGGAAAGCGGCTTAAACCATTACCATAATCTGTTTTGCATGAAAGCCAATGCTGCAAAGGCTGATGTTTTCTATTTAATGTCCGGTGTATGGAGATCATCAGCAGAGCGTTTTTTCCTGTGGATTGGAGGATTTCGGCCATCGGAGCTGCTAAACGTGCTGACGCCATACTTTGAGGCATTAAATGAACAACAACAGAGCGCTATTCACAATTTGCAGCAGTCGTCTCGGCAAGCTGAAGACGCGCTCTCACAGGGAATGGAAAAACTGCACCAGAATCTATCCCTCAGCATTGCCAGCGATCCTATAGGAAGCTATATTTCTGAGATGGGTGATGGAATGGAGAAAGCAGAAGCATTGGAGAGCTTGGTAAGGCAGCCGAGTGTGTGCTACTCTTTTCTGGAACAGGCAGACCATCTGAGGCAACAAACTTTGAAGAGAATGTCCCACATCCTAAGTACCAAACAAGCGGCGCAAGGGTTGGTCGCTCTAGGCGAGTACTTCCACCGTCTCCGTATTCTGAGCTCCCTCTGGGCCACTCGACCTCGTGAACCTGCGTAG 1131 46.07 MIGQQSMSSSSAQLYASRMGIYEPFHQINSWGNAFGTRLDTSISPIIKVDDCVDNKPEFVPFESMDHHESSQETNKPIDDKVQRRLTQNREAARKSRMRKKVYVQQLETSRLKLAQLEQELERTKQKGVYTASCLADTSHLGFSRLVNPGIAAFEIEYNHWVEKQERQITELRKALQQVHIITDTELQILVESGLNHYHNLFCMKANAAKADVFYLMSGVWRSSAERFFLWIGGFRPSELLNVLTPYFEALNEQQQSAIHNLQQSSRQAEDALSQGMEKLHQNLSLSIASDPIGSYISEMGDGMEKAEALESLVRQPSVCYSFLEQADHLRQQTLKRMSHILSTKQAAQGLVALGEYFHRLRILSSLWATRPREPA 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 338564 341585 - Carg22858-RA Car15g00042 161879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00042 376 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Car15g00042 376 SMART brlzneu 77 141 IPR004827 GO:0003700|GO:0006355
Car15g00042 376 Coils Coil 162 182 - -
Car15g00042 376 Pfam Seed dormancy control 168 245 IPR025422 GO:0006351|GO:0043565
Car15g00042 376 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 123 IPR004827 GO:0003700|GO:0006355
Car15g00042 376 Gene3D - 80 129 - -
Car15g00042 376 Coils Coil 252 272 - -
Car15g00042 376 SUPERFAMILY Leucine zipper domain 81 121 IPR046347 GO:0003700|GO:0006355
Car15g00042 376 PANTHER TRANSCRIPTION FACTOR TGA9 7 375 - -
Car15g00042 376 PANTHER TRANSCRIPTION FACTOR TGA7 7 375 - -
Car15g00042 376 Coils Coil 100 127 - -
Car15g00042 376 ProSiteProfiles DOG1 domain profile. 151 371 IPR025422 GO:0006351|GO:0043565
Car15g00042 376 Pfam bZIP transcription factor 80 119 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00736 Car-Chr4:4269395 Car15g00042 Car-Chr15:338564 9.27E-93 dispersed
Car13g00482 Car-Chr13:7053844 Car15g00042 Car-Chr15:338564 1.17E-08 dispersed
Car15g00042 Car-Chr15:338564 Car16g00700 Car-Chr16:4450520 4.69E-122 dispersed
Car15g00042 Car-Chr15:338564 Car04g02893 Car-Chr4:21804394 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4769 PF14144 DOG1 3.00E-28 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00042 K14431 - csv:101217648 630.557