Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00063 ATGGTTCTACTGGAGATTTGCTTTGTTTTCATTGTGAGCAACCATTTTTCATCTGTGTCTTCTCTGAATGAAGAGGGATTGGCTCTGCTTTCATTCAGAAACTCAACTTTTGATGCCGAAGGCTTCCTCCATAACTGGAACTTCTATGATACAACCCCGTGTTCCTGGAATGGAATCACTTGTACAGAACAAAGAGTTGTTTCTCTCAGTATTGAAGACAAGAAACTCTCTGGTACTCTCCACCCTGCACTTGGGAAGCTTGGGTCACTCCGTCATTTAAGCCTTCGAAACAATAGTCTTTTCGGAAGCTTCCCAACTGAGCTCTACAAGCTGGTAGAATTACAAAGCTTGGATCTCTCACAAAATGTCTTTAATGGCAGTATTCCAGATGGGTTTGGTTCCCATTTGACATCCCTTCAGTATCTCAATCTTTCCTCCAATGTCATCAACGGTGGGATCCCTGCAGACTTTGGCAACTTGTCCCACTTGCGAGGCACTCTTGGTTTGTCTCACAATGTCTTTACCGGCCCAATCCCTCCAAGCCTAAGCAGCCTCCCTGCAACCCTTTATATCGATCTAAGTTACAATAATCTCAGTGGCCAAATACCACCACAAGAAGCTTTCCAGAACCTTGGTCCAACAGCTTACGTAGGGAATGCCTTTCTATGTGGACTTCCTCTCAATGTTTCATGTCCACTCATGGTGCCAACGTCAAACCACGACTCGTGGTTCCATTGCCCATCACATGGGAAAGGTGGAAAATCTTGCTCCATAATCACAGGCTCTGCAAGTATCATAGTTGGTTTCTGCCTGTATTTTGGTGCAAGAGGGCCTTATCCTTCTAAAGGGAGTGAAAATGTAGATGGCTGTAACTTTAGCCAGGCATTGATGTTTAAAACAGAGTTTTCTTGCTTTGCAAAACTTGATGTTGAGACCCTACCAGAAAACATGGAGAAGTATAATTTCGTGTTACTGGATCGGCAAGTCGACTTCAATCTCGAGCAACTTTTGAAAGCCTCAGCTTATCTTCTAGGAAAGAATGGGAATGGGATTGTGTATCAAGTGGTTCTAGAGAAGGGACTAAAGCTAGCCGTAAGAAGGTTGGAAGATGGAGCTTATGAAAGGTTTAAAGAGTTCCAAACTGAAGTTGAAGCAATTGGGAAAGTCAGGCATCCCAATATCGTAGCTCTTTTAGCTTACTGCTGGTCTCTTGAAGAGAAGCTGCTCATTCATGAATACATACCACGTGGAGACCTGGCCACTGCACTTCATGGGAAAGCAGAAATTTCCTACTTCCGACCACTTTCTTGGGCTGATCGTGTGAAGATCATGAAAGGAGTAGCAAACGGATTGACATATCTTCACGAATTCAGTCCAAGAAAATACGTCCACGGCGATCTGAAGCCGACCAACATTCTGCTAGGAAACAACATGGTACCTTACATCTCAGATTTCGGACTCGGACGACTTTCAAATGCCGCCGGAGATCTCAGTGCCTCACCTTCAGAGCGAACCCCCGCCGCAACGCCGCGGCGGTCTCCGTTCCGATCAAACTCCATGTGCTCCTCTCTGTCAATAGGGTCCTATTATCAAGCCCCTGAAGCCTTGAAGGCGGCAAAGCCATCGCAGAAGTGGGATGTTTACTCGTTTGGCGTGATATTACTGGAAATTATCACCGGAAAGATGGCGGTGATTCAAGCGGGTTCGTCGGAGATGGAGCTGGTTCAATGGATTCAACTTGGAATCGATGAGGGGAAACGGCCATCGTGTATCATAGACCGTCCATGTGTGGGGAAGTGGACGAGGAAGAAGCTGCGGCTGCCATTGATATAG 1833 45.99 MVLLEICFVFIVSNHFSSVSSLNEEGLALLSFRNSTFDAEGFLHNWNFYDTTPCSWNGITCTEQRVVSLSIEDKKLSGTLHPALGKLGSLRHLSLRNNSLFGSFPTELYKLVELQSLDLSQNVFNGSIPDGFGSHLTSLQYLNLSSNVINGGIPADFGNLSHLRGTLGLSHNVFTGPIPPSLSSLPATLYIDLSYNNLSGQIPPQEAFQNLGPTAYVGNAFLCGLPLNVSCPLMVPTSNHDSWFHCPSHGKGGKSCSIITGSASIIVGFCLYFGARGPYPSKGSENVDGCNFSQALMFKTEFSCFAKLDVETLPENMEKYNFVLLDRQVDFNLEQLLKASAYLLGKNGNGIVYQVVLEKGLKLAVRRLEDGAYERFKEFQTEVEAIGKVRHPNIVALLAYCWSLEEKLLIHEYIPRGDLATALHGKAEISYFRPLSWADRVKIMKGVANGLTYLHEFSPRKYVHGDLKPTNILLGNNMVPYISDFGLGRLSNAAGDLSASPSERTPAATPRRSPFRSNSMCSSLSIGSYYQAPEALKAAKPSQKWDVYSFGVILLEIITGKMAVIQAGSSEMELVQWIQLGIDEGKRPSCIIDRPCVGKWTRKKLRLPLI 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 420303 422250 + Carg22837-RA Car15g00063 161900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00063 610 MobiDBLite consensus disorder prediction 496 519 - -
Car15g00063 610 ProSiteProfiles Protein kinase domain profile. 338 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00063 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Car15g00063 610 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515
Car15g00063 610 Pfam Leucine Rich Repeat 89 107 IPR001611 GO:0005515
Car15g00063 610 Pfam Protein kinase domain 344 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car15g00063 610 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car15g00063 Car-Chr15:420303 Car18g00653 Car-Chr18:7798146 5.88E-125 dispersed
Car15g00063 Car-Chr15:420303 Car18g00920 Car-Chr18:9971576 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89368 PF00069 Pkinase 2.00E-31 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00063 - - cmo:103485458 1009.59