Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car15g00107 ATGAGTTTTGTTTTCCGTGGAACAAGAGTTCCAGACATAGAAAATGGTCTATCTGGATTTATACCTGAACGGCGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTGTTCATGATGTTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTGTTTTTGATGGCTACAACATTAAGGATGTATGCGACCTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTTGGGCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCTACTAGAGGACGTTTACAAGGGCTAAGGCTTCAACTTGCTCTGCTTGATCGGGAATTTGATGATTTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATAAATGCTCTTCCTGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTGAACCAGCAGGCTTCATCTTCAGAGTCTAATGAGAAGAGACAAGATTCAGCTAATGCAGTTGGCAGTACCAAGGCCTCGGAGGATGAACTTACGTGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCGTACGTAGTCTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGCACGTGCCCTGTTTGTAAATTCAGAGCGGTGTCTGGGTGGTCAGAACAGGGACAAGGGGAAACCGATGCGTATTCG 822 45.86 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMMLNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSANAVGSTKASEDELTCSVCLEQVNVGELVRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYS 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 634392 637168 - Carg02087-RA Car15g00107 161944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car15g00107 274 Pfam Ring finger domain 213 255 IPR001841 -
Car15g00107 274 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Car15g00107 274 MobiDBLite consensus disorder prediction 176 205 - -
Car15g00107 274 MobiDBLite consensus disorder prediction 171 205 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car04g02837 Car15g00107 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g01085 Car-Chr6:8144746 Car15g00107 Car-Chr15:634392 2.55E-13 dispersed
Car11g01594 Car-Chr11:12615818 Car15g00107 Car-Chr15:634392 6.79E-13 dispersed
Car14g01680 Car-Chr14:13364029 Car15g00107 Car-Chr15:634392 9.79E-16 dispersed
Car15g00107 Car-Chr15:634392 Car04g00488 Car-Chr4:2759713 2.89E-14 dispersed
Car15g00107 Car-Chr15:634392 Car04g02837 Car-Chr4:21562968 2.58E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car15g00107 K16283 - csv:101216306 487.263